Variant report

Variant	rs17238835
Chromosome Location	chr6:147389911-147389912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10499246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12111514	0.85[EUR][1000 genomes]
rs12661562	0.95[ASN][1000 genomes]
rs12661663	1.00[ASN][1000 genomes]
rs12661744	1.00[ASN][1000 genomes]
rs17076610	0.85[EUR][1000 genomes]
rs58134586	0.87[EUR][1000 genomes]
rs59578647	0.87[EUR][1000 genomes]
rs6913672	0.85[EUR][1000 genomes]
rs6916236	0.85[EUR][1000 genomes]
rs6920520	0.87[EUR][1000 genomes]
rs6924581	0.85[EUR][1000 genomes]
rs6929579	0.87[EUR][1000 genomes]
rs73588114	0.85[EUR][1000 genomes]
rs73588127	0.87[EUR][1000 genomes]
rs73588149	0.87[EUR][1000 genomes]
rs9791310	0.87[EUR][1000 genomes]
rs9791311	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv823856	chr6:147384260-147393263	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147385400-147390800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:147385800-147390600	Weak transcription	Ovary	ovary
3	chr6:147387000-147396600	Weak transcription	Brain Anterior Caudate	brain
4	chr6:147387200-147391000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:147389600-147390600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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