Variant report

Variant	rs58134586
Chromosome Location	chr6:147389443-147389444
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147382391..147386290-chr6:147386680..147389719,4	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10499246	0.87[EUR][1000 genomes]
rs1113883	0.96[ASN][1000 genomes]
rs11967383	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11969474	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12111514	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12661078	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12661753	0.96[ASN][1000 genomes]
rs12664201	0.96[ASN][1000 genomes]
rs12664682	0.96[ASN][1000 genomes]
rs12664716	0.96[ASN][1000 genomes]
rs1529012	0.84[ASN][1000 genomes]
rs17076589	0.87[ASN][1000 genomes]
rs17076610	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17238835	0.87[EUR][1000 genomes]
rs58922329	0.94[ASN][1000 genomes]
rs59578647	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61443164	0.94[ASN][1000 genomes]
rs6904708	0.96[ASN][1000 genomes]
rs6907758	0.93[ASN][1000 genomes]
rs6909582	1.00[ASN][1000 genomes]
rs6913549	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913672	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6916236	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6917323	0.83[ASN][1000 genomes]
rs6920520	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924581	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6924985	0.96[ASN][1000 genomes]
rs6925187	0.96[ASN][1000 genomes]
rs6925633	0.96[ASN][1000 genomes]
rs6929579	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73588114	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73588127	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73588137	1.00[ASN][1000 genomes]
rs73588149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73590029	0.96[ASN][1000 genomes]
rs7764355	0.96[ASN][1000 genomes]
rs7773216	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9485137	0.87[ASN][1000 genomes]
rs9485142	0.96[ASN][1000 genomes]
rs9485144	0.84[ASN][1000 genomes]
rs9497695	0.96[ASN][1000 genomes]
rs9497696	0.96[ASN][1000 genomes]
rs9497707	0.84[ASN][1000 genomes]
rs9791310	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791311	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885771	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv823856	chr6:147384260-147393263	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147385400-147390800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:147385800-147390600	Weak transcription	Ovary	ovary
3	chr6:147387000-147396600	Weak transcription	Brain Anterior Caudate	brain
4	chr6:147387200-147391000	Weak transcription	Brain Angular Gyrus	brain

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