Variant report

Variant	rs12664201
Chromosome Location	chr6:147408046-147408047
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:147402891..147404620-chr6:147406849..147408959,2	K562	blood:
2	chr6:147203984..147206135-chr6:147407183..147409245,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1113883	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11967383	0.89[ASN][1000 genomes]
rs11969474	0.89[ASN][1000 genomes]
rs12111514	0.89[ASN][1000 genomes]
rs12661078	0.89[ASN][1000 genomes]
rs12661663	0.84[EUR][1000 genomes]
rs12661744	0.84[EUR][1000 genomes]
rs12661753	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664682	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664716	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1529012	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17076589	0.83[ASN][1000 genomes]
rs17076610	0.89[ASN][1000 genomes]
rs58134586	0.96[ASN][1000 genomes]
rs58922329	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59578647	0.92[ASN][1000 genomes]
rs61443164	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6904708	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907758	0.89[ASN][1000 genomes]
rs6909582	0.96[ASN][1000 genomes]
rs6913549	0.96[ASN][1000 genomes]
rs6913672	0.89[ASN][1000 genomes]
rs6916236	0.89[ASN][1000 genomes]
rs6917323	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6920520	0.96[ASN][1000 genomes]
rs6924581	0.89[ASN][1000 genomes]
rs6924985	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925187	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925324	0.85[AFR][1000 genomes]
rs6925633	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929579	0.96[ASN][1000 genomes]
rs73588114	0.89[ASN][1000 genomes]
rs73588127	0.92[ASN][1000 genomes]
rs73588137	0.96[ASN][1000 genomes]
rs73588149	0.96[ASN][1000 genomes]
rs73590029	0.92[ASN][1000 genomes]
rs7764355	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773216	0.89[ASN][1000 genomes]
rs9485137	0.83[ASN][1000 genomes]
rs9485142	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485144	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9497695	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497697	0.83[AFR][1000 genomes]
rs9497707	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9791310	0.96[ASN][1000 genomes]
rs9791311	0.96[ASN][1000 genomes]
rs9885771	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	esv274984	chr6:147405612-147408968	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147402600-147412000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:147403200-147408400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:147403800-147410000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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