Variant report
| Variant | rs17076589 |
|---|---|
| Chromosome Location | chr6:147360518-147360519 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs1113883 | 0.83[ASN][1000 genomes] |
| rs11967383 | 0.94[ASN][1000 genomes] |
| rs11969474 | 0.94[ASN][1000 genomes] |
| rs12111514 | 0.94[ASN][1000 genomes] |
| rs12661078 | 0.80[ASN][1000 genomes] |
| rs12661753 | 0.83[ASN][1000 genomes] |
| rs12664201 | 0.83[ASN][1000 genomes] |
| rs12664682 | 0.83[ASN][1000 genomes] |
| rs12664716 | 0.83[ASN][1000 genomes] |
| rs1529012 | 0.82[CHB][hapmap] |
| rs17076610 | 1.00[CHB][hapmap];0.94[ASN][1000 genomes] |
| rs58134586 | 0.87[ASN][1000 genomes] |
| rs58922329 | 0.81[ASN][1000 genomes] |
| rs59578647 | 0.90[ASN][1000 genomes] |
| rs61443164 | 0.81[ASN][1000 genomes] |
| rs6904708 | 0.83[ASN][1000 genomes] |
| rs6907758 | 0.94[ASN][1000 genomes] |
| rs6909582 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs6913549 | 0.87[ASN][1000 genomes] |
| rs6913672 | 0.94[ASN][1000 genomes] |
| rs6916236 | 0.94[ASN][1000 genomes] |
| rs6920520 | 0.87[ASN][1000 genomes] |
| rs6924581 | 0.94[ASN][1000 genomes] |
| rs6924985 | 0.83[ASN][1000 genomes] |
| rs6925187 | 0.83[ASN][1000 genomes] |
| rs6925633 | 0.83[ASN][1000 genomes] |
| rs6929579 | 0.87[ASN][1000 genomes] |
| rs73588114 | 0.94[ASN][1000 genomes] |
| rs73588127 | 0.90[ASN][1000 genomes] |
| rs73588137 | 0.87[ASN][1000 genomes] |
| rs73588149 | 0.87[ASN][1000 genomes] |
| rs73590029 | 0.83[ASN][1000 genomes] |
| rs7764355 | 0.83[ASN][1000 genomes] |
| rs7773216 | 0.94[ASN][1000 genomes] |
| rs9485137 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9485142 | 0.83[ASN][1000 genomes] |
| rs9497695 | 0.83[ASN][1000 genomes] |
| rs9497696 | 0.83[ASN][1000 genomes] |
| rs9497707 | 0.82[CHB][hapmap] |
| rs9791310 | 0.87[ASN][1000 genomes] |
| rs9791311 | 0.87[ASN][1000 genomes] |
| rs9885771 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019245 | chr6:147350834-147609776 | Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv538467 | chr6:147350834-147609776 | Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 3 | nsv886751 | chr6:147354092-147490398 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:147343800-147364800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr6:147357400-147361600 | Weak transcription | Fetal Brain Female | brain |
| 3 | chr6:147360200-147361000 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
