Variant report

Variant	rs12661078
Chromosome Location	chr6:147391994-147391995
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147383491..147386446-chr6:147390287..147393281,3	K562	blood:
2	chr6:147391002..147395270-chr6:147401582..147403609,4	K562	blood:
3	chr6:147391588..147394483-chr6:147471638..147473937,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1113883	0.89[ASN][1000 genomes]
rs11967383	0.86[ASN][1000 genomes]
rs11969474	0.86[ASN][1000 genomes]
rs12111514	0.86[ASN][1000 genomes]
rs12661753	0.89[ASN][1000 genomes]
rs12664201	0.89[ASN][1000 genomes]
rs12664682	0.89[ASN][1000 genomes]
rs12664716	0.89[ASN][1000 genomes]
rs17076589	0.80[ASN][1000 genomes]
rs17076610	0.86[ASN][1000 genomes]
rs58134586	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58922329	0.87[ASN][1000 genomes]
rs59578647	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61443164	0.87[ASN][1000 genomes]
rs6904708	0.89[ASN][1000 genomes]
rs6907758	0.86[ASN][1000 genomes]
rs6909582	0.93[ASN][1000 genomes]
rs6913549	0.93[ASN][1000 genomes]
rs6913672	0.86[ASN][1000 genomes]
rs6916236	0.86[ASN][1000 genomes]
rs6920520	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6924581	0.86[ASN][1000 genomes]
rs6924985	0.89[ASN][1000 genomes]
rs6925187	0.89[ASN][1000 genomes]
rs6925633	0.89[ASN][1000 genomes]
rs6929579	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73588114	0.86[ASN][1000 genomes]
rs73588127	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73588137	0.93[ASN][1000 genomes]
rs73588149	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73590029	0.89[ASN][1000 genomes]
rs7764355	0.89[ASN][1000 genomes]
rs7773216	0.86[ASN][1000 genomes]
rs9485137	0.80[ASN][1000 genomes]
rs9485142	0.89[ASN][1000 genomes]
rs9497695	0.89[ASN][1000 genomes]
rs9497696	0.89[ASN][1000 genomes]
rs9791310	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9791311	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9885771	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886751	chr6:147354092-147490398	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv823856	chr6:147384260-147393263	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147387000-147396600	Weak transcription	Brain Anterior Caudate	brain
2	chr6:147391200-147392200	Weak transcription	Left Ventricle	heart
3	chr6:147391200-147398400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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