Variant report

Variant	rs73578813
Chromosome Location	chr11:119493616-119493617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7129419	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7130822	0.87[AMR][1000 genomes]
rs73578834	1.00[AMR][1000 genomes]
rs73578840	1.00[AMR][1000 genomes]
rs73578845	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv898419	chr11:119488646-119518006	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119488600-119494600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:119488800-119494600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:119489200-119494200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr11:119489200-119494600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:119489400-119494400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:119489600-119495200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:119489600-119496200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:119489800-119494400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:119489800-119496000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:119493200-119493800	Enhancers	Fetal Muscle Trunk	muscle
11	chr11:119493200-119495200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr11:119493200-119495400	Enhancers	Brain Hippocampus Middle	brain
13	chr11:119493200-119495400	Enhancers	Brain Substantia Nigra	brain
14	chr11:119493400-119494200	Enhancers	Brain Anterior Caudate	brain
15	chr11:119493400-119494200	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:119493400-119496400	Enhancers	Fetal Muscle Leg	muscle
17	chr11:119493400-119498600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:119493600-119494400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr11:119493600-119495800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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