Variant report

Variant	rs73578834
Chromosome Location	chr11:119497214-119497215
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr11:119497094-119497489	PANC-1	pancreas:	n/a	chr11:119497218-119497227 chr11:119497218-119497228

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119497063..119498948-chr11:119500859..119503017,2	K562	blood:

Variant related genes	Relation type
ENSG00000254561	TF binding region
ENSG00000254561	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7129419	0.87[AMR][1000 genomes]
rs7130822	0.87[AMR][1000 genomes]
rs73578813	1.00[AMR][1000 genomes]
rs73578840	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578845	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv898419	chr11:119488646-119518006	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119493400-119498600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:119493800-119498000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr11:119493800-119501200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr11:119494200-119498200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:119494200-119498400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:119494400-119497800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr11:119494400-119498200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:119494400-119502800	Weak transcription	Spleen	Spleen
9	chr11:119494600-119498000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:119495000-119498600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:119495000-119499400	Bivalent Enhancer	HepG2	liver
12	chr11:119495200-119498000	Enhancers	Adipose Nuclei	Adipose
13	chr11:119495200-119498200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr11:119495200-119498400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:119495400-119498200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr11:119495600-119498000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:119495800-119497600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
18	chr11:119496000-119497400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:119496000-119497400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:119496000-119497600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:119496000-119498200	Bivalent Enhancer	Placenta	Placenta
22	chr11:119496000-119498200	Enhancers	HSMM	muscle
23	chr11:119496000-119498600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:119496000-119499000	Bivalent Enhancer	Fetal Stomach	stomach
25	chr11:119496200-119497400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:119496200-119497800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr11:119496200-119497800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:119496200-119498200	Enhancers	HSMMtube	muscle
29	chr11:119496400-119497400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:119496400-119497400	Bivalent Enhancer	Fetal Muscle Leg	muscle
31	chr11:119496600-119497600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:119496600-119497800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:119496600-119498000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:119496600-119498800	Weak transcription	Right Atrium	heart
35	chr11:119496800-119497400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:119496800-119497600	Weak transcription	Esophagus	oesophagus
37	chr11:119497000-119497400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr11:119497000-119498000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr11:119497200-119497600	Weak transcription	Fetal Lung	lung

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