Variant report

Variant	rs73580423
Chromosome Location	chr6:142675071-142675072
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59865783	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73578316	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582565	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142654800-142676600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:142657400-142678800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:142663400-142676400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:142665600-142680200	Weak transcription	HUVEC	blood vessel
5	chr6:142666000-142677000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:142670600-142676200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:142670800-142676600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:142670800-142676600	Weak transcription	Thymus	Thymus
9	chr6:142671400-142679400	Weak transcription	Liver	Liver
10	chr6:142672600-142676600	Strong transcription	HepG2	liver
11	chr6:142672600-142680800	Weak transcription	Fetal Brain Male	brain
12	chr6:142674400-142678000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:142674600-142675200	Enhancers	Brain Angular Gyrus	brain
14	chr6:142674600-142676600	Enhancers	A549	lung
15	chr6:142674800-142676600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:142674800-142680400	Enhancers	Fetal Lung	lung
17	chr6:142675000-142675800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:142675000-142676000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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