Variant report

Variant	rs73581132
Chromosome Location	chr11:119848566-119848567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119846486..119848999-chr11:119849174..119851937,3	K562	blood:
2	chr11:119847784..119851574-chr11:119854250..119856305,4	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11820386	1.00[AMR][1000 genomes]
rs13377581	1.00[AMR][1000 genomes]
rs56783809	1.00[AMR][1000 genomes]
rs73579043	1.00[AMR][1000 genomes]
rs73579052	1.00[AMR][1000 genomes]
rs73579061	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119844200-119849600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:119846200-119850400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:119846200-119853000	Enhancers	Fetal Intestine Large	intestine
4	chr11:119846400-119853000	Enhancers	Fetal Intestine Small	intestine
5	chr11:119846800-119848800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr11:119846800-119853200	Weak transcription	Fetal Brain Female	brain
7	chr11:119846800-119858600	Weak transcription	Fetal Heart	heart
8	chr11:119847000-119848600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:119847000-119849800	Weak transcription	Right Atrium	heart
10	chr11:119847600-119849000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:119847800-119848800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:119847800-119848800	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr11:119847800-119849000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:119847800-119851400	Weak transcription	Brain Germinal Matrix	brain
15	chr11:119847800-119853400	Weak transcription	Brain Anterior Caudate	brain
16	chr11:119848000-119848600	Flanking Active TSS	Brain Substantia Nigra	brain
17	chr11:119848000-119849200	Active TSS	Brain Hippocampus Middle	brain
18	chr11:119848200-119848600	Flanking Active TSS	Brain Cingulate Gyrus	brain
19	chr11:119848200-119849800	Enhancers	Duodenum Mucosa	Duodenum
20	chr11:119848400-119848600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:119848400-119849200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:119848400-119853200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr11:119848400-119854200	Weak transcription	Brain Angular Gyrus	brain

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