Variant report

Variant	rs73579052
Chromosome Location	chr11:119768142-119768143
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11217557	0.87[AFR][1000 genomes]
rs11820386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377581	1.00[AMR][1000 genomes]
rs56783809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579043	1.00[AMR][1000 genomes]
rs73579061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73581132	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051526	chr11:119750335-119775811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1044698	chr11:119767614-119789683	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119747200-119768200	Weak transcription	Fetal Intestine Small	intestine
2	chr11:119763000-119768400	Weak transcription	Left Ventricle	heart
3	chr11:119763000-119780800	Weak transcription	Right Atrium	heart
4	chr11:119765800-119768600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:119765800-119773800	Weak transcription	Esophagus	oesophagus
6	chr11:119766400-119768200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:119766400-119768200	Weak transcription	Placenta	Placenta
8	chr11:119767400-119768600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:119767400-119769000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:119767600-119769200	Enhancers	Stomach Smooth Muscle	stomach
11	chr11:119767800-119768600	Enhancers	Aorta	Aorta
12	chr11:119767800-119768800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:119767800-119770800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:119768000-119768600	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr11:119768000-119768800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:119768000-119768800	Bivalent Enhancer	Fetal Stomach	stomach
17	chr11:119768000-119769600	Enhancers	Fetal Heart	heart
18	chr11:119768000-119778000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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