Variant report

Variant	rs11217557
Chromosome Location	chr11:119773623-119773624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10892484	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11820386	0.87[AFR][1000 genomes]
rs12224878	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12225080	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17123457	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs506872	0.86[AMR][1000 genomes]
rs507622	0.98[ASN][1000 genomes]
rs548636	0.91[ASN][1000 genomes]
rs556276	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56783809	0.87[AFR][1000 genomes]
rs57197193	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs649837	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs651232	0.98[ASN][1000 genomes]
rs73579052	0.87[AFR][1000 genomes]
rs73579061	0.87[AFR][1000 genomes]
rs78015	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051526	chr11:119750335-119775811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1044698	chr11:119767614-119789683	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1051760	chr11:119770181-119789683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1048084	chr11:119771748-119808864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119763000-119780800	Weak transcription	Right Atrium	heart
2	chr11:119765800-119773800	Weak transcription	Esophagus	oesophagus
3	chr11:119768000-119778000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:119768800-119773800	Weak transcription	Placenta	Placenta
5	chr11:119772600-119775800	Enhancers	Stomach Mucosa	stomach
6	chr11:119772600-119779800	Enhancers	Liver	Liver
7	chr11:119772800-119774400	Weak transcription	Brain Germinal Matrix	brain
8	chr11:119773000-119773800	Active TSS	Duodenum Mucosa	Duodenum
9	chr11:119773000-119774200	Weak transcription	Pancreas	Pancrea
10	chr11:119773200-119774600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:119773200-119776000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:119773400-119774400	Enhancers	Brain Angular Gyrus	brain
13	chr11:119773600-119774400	Enhancers	Brain Substantia Nigra	brain
14	chr11:119773600-119775400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:119773600-119775400	Enhancers	Gastric	stomach
16	chr11:119773600-119776000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr11:119773600-119776200	Enhancers	Fetal Intestine Large	intestine
18	chr11:119773600-119776200	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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