Variant report

Variant	rs649837
Chromosome Location	chr11:119764035-119764036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10892484	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217557	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12224878	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12225080	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123457	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs506872	0.80[ASN][1000 genomes]
rs507622	0.98[ASN][1000 genomes]
rs548636	0.91[ASN][1000 genomes]
rs556276	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57197193	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs651232	0.98[ASN][1000 genomes]
rs667917	0.88[AFR][1000 genomes]
rs78015	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051526	chr11:119750335-119775811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119747200-119768200	Weak transcription	Fetal Intestine Small	intestine
2	chr11:119760000-119764200	Enhancers	Brain Substantia Nigra	brain
3	chr11:119760200-119764600	Enhancers	Brain Cingulate Gyrus	brain
4	chr11:119760400-119764200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr11:119760800-119764600	Enhancers	Fetal Heart	heart
6	chr11:119762600-119765600	Weak transcription	Esophagus	oesophagus
7	chr11:119763000-119764600	Weak transcription	Brain Angular Gyrus	brain
8	chr11:119763000-119767800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:119763000-119768400	Weak transcription	Left Ventricle	heart
10	chr11:119763000-119780800	Weak transcription	Right Atrium	heart
11	chr11:119763800-119767200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:119763800-119767400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:119764000-119768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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