Variant report

Variant	rs506872
Chromosome Location	chr11:119779811-119779812
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119776418..119778910-chr11:119779204..119783369,3	MCF-7	breast:
2	chr11:119779711..119781214-chr11:119976355..119978913,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10892484	0.80[ASN][1000 genomes]
rs11217557	0.86[AMR][1000 genomes]
rs12225080	0.80[ASN][1000 genomes]
rs17123457	0.80[ASN][1000 genomes]
rs649837	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1044698	chr11:119767614-119789683	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1051760	chr11:119770181-119789683	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1048084	chr11:119771748-119808864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv275318	chr11:119775811-119785360	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119763000-119780800	Weak transcription	Right Atrium	heart
2	chr11:119775200-119780200	Enhancers	Placenta	Placenta
3	chr11:119775400-119780400	Weak transcription	Gastric	stomach
4	chr11:119775800-119781400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:119776800-119780000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:119777000-119780000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:119777200-119780000	Enhancers	Fetal Brain Male	brain
8	chr11:119777200-119782600	Enhancers	Fetal Heart	heart
9	chr11:119777600-119783000	Enhancers	Brain Angular Gyrus	brain
10	chr11:119777800-119781800	Enhancers	Brain Germinal Matrix	brain
11	chr11:119778000-119780000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:119778000-119780400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:119778200-119783200	Enhancers	Brain Cingulate Gyrus	brain
14	chr11:119778400-119780200	Enhancers	Fetal Brain Female	brain
15	chr11:119778400-119780800	Weak transcription	Pancreas	Pancrea
16	chr11:119778400-119780800	Weak transcription	Right Ventricle	heart
17	chr11:119778400-119781000	Weak transcription	Spleen	Spleen
18	chr11:119778400-119781600	Enhancers	Brain Anterior Caudate	brain
19	chr11:119778400-119783000	Enhancers	Brain Hippocampus Middle	brain
20	chr11:119778400-119783000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:119778400-119783200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr11:119778600-119781800	Enhancers	Stomach Mucosa	stomach
23	chr11:119778600-119782200	Enhancers	Fetal Intestine Large	intestine
24	chr11:119778800-119782000	Enhancers	Brain Substantia Nigra	brain
25	chr11:119779400-119781800	Enhancers	Colonic Mucosa	Colon
26	chr11:119779400-119782000	Enhancers	Duodenum Mucosa	Duodenum
27	chr11:119779400-119782000	Enhancers	Fetal Intestine Small	intestine
28	chr11:119779600-119781800	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr11:119779600-119781800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr11:119779600-119782800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:119779800-119784600	Weak transcription	Esophagus	oesophagus

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