Variant report

Variant	rs556276
Chromosome Location	chr11:119758386-119758387
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10892484	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11217557	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12224878	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12225080	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17123457	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs507622	0.91[ASN][1000 genomes]
rs548636	0.98[ASN][1000 genomes]
rs57197193	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs649837	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs651232	0.91[ASN][1000 genomes]
rs78015	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051526	chr11:119750335-119775811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119746000-119762400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:119747200-119758600	Weak transcription	Right Ventricle	heart
3	chr11:119747200-119768200	Weak transcription	Fetal Intestine Small	intestine
4	chr11:119747600-119762400	Weak transcription	Esophagus	oesophagus
5	chr11:119749600-119760000	Enhancers	Fetal Heart	heart
6	chr11:119753600-119758400	Weak transcription	Left Ventricle	heart
7	chr11:119755200-119760400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr11:119757400-119758600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:119757400-119760400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:119757600-119760000	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr11:119757800-119758800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:119758000-119759200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:119758200-119758600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links