Variant report

Variant	rs73581728
Chromosome Location	chr10:200449-200450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:179114..184532-chr10:197541..200873,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000015171	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10795023	1.00[AMR][1000 genomes]
rs12773603	1.00[AMR][1000 genomes]
rs3097718	1.00[AMR][1000 genomes]
rs3097722	1.00[AMR][1000 genomes]
rs3097723	1.00[AMR][1000 genomes]
rs3097727	1.00[AMR][1000 genomes]
rs3097731	1.00[AMR][1000 genomes]
rs3123227	1.00[AMR][1000 genomes]
rs3123231	1.00[AMR][1000 genomes]
rs3123233	1.00[AMR][1000 genomes]
rs3123237	1.00[AMR][1000 genomes]
rs3123243	1.00[AMR][1000 genomes]
rs3125032	1.00[AMR][1000 genomes]
rs3125039	1.00[AMR][1000 genomes]
rs3132000	1.00[AMR][1000 genomes]
rs3132005	1.00[AMR][1000 genomes]
rs3132007	1.00[AMR][1000 genomes]
rs3132009	1.00[AMR][1000 genomes]
rs41289245	1.00[AMR][1000 genomes]
rs4242753	1.00[AMR][1000 genomes]
rs4242754	1.00[AMR][1000 genomes]
rs4366415	1.00[AMR][1000 genomes]
rs4880609	1.00[AMR][1000 genomes]
rs4880610	1.00[AMR][1000 genomes]
rs61683125	1.00[AMR][1000 genomes]
rs7068944	1.00[AMR][1000 genomes]
rs7071457	1.00[AMR][1000 genomes]
rs7087181	1.00[AMR][1000 genomes]
rs7091570	1.00[AMR][1000 genomes]
rs7095303	1.00[AMR][1000 genomes]
rs73583756	1.00[AMR][1000 genomes]
rs9731043	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531919	chr10:60001-668649	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1040332	chr10:72797-244561	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1044775	chr10:72797-250662	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1047868	chr10:72797-259003	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1048232	chr10:72797-274675	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:183200-205400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr10:183400-200800	Weak transcription	Thymus	Thymus
3	chr10:188800-202600	Weak transcription	A549	lung
4	chr10:189000-204000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr10:189000-208800	Weak transcription	Small Intestine	intestine
6	chr10:189200-201800	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:190400-215200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr10:190600-203200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:190600-212800	Weak transcription	Left Ventricle	heart
10	chr10:194000-211400	Weak transcription	Fetal Lung	lung
11	chr10:194200-228200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:194600-210400	Weak transcription	Primary T cells from cord blood	blood
13	chr10:194800-206200	Weak transcription	Pancreas	Pancrea
14	chr10:194800-212600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr10:195400-207000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:196400-206200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:196800-215000	Weak transcription	Fetal Intestine Large	intestine
18	chr10:197000-200800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:197000-209600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:197400-209200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:197400-210400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr10:197400-211200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:197800-219800	Weak transcription	HUVEC	blood vessel
24	chr10:198600-206000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:199600-200600	Enhancers	Ovary	ovary
26	chr10:199600-209800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr10:199800-200600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:199800-200600	Enhancers	NH-A	brain
29	chr10:200000-200600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr10:200000-201000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr10:200000-201400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:200000-207600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:200000-228000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr10:200200-200600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:200200-200600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:200200-200600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr10:200400-200600	Enhancers	Muscle Satellite Cultured Cells	--
38	chr10:200400-201800	Weak transcription	Gastric	stomach
39	chr10:200400-202000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr10:200400-203200	Weak transcription	Right Ventricle	heart
41	chr10:200400-206400	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr10:200400-207200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr10:200400-207600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr10:200400-208800	Weak transcription	Psoas Muscle	Psoas
45	chr10:200400-209200	Weak transcription	Adipose Nuclei	Adipose
46	chr10:200400-226800	Weak transcription	HSMM	muscle
47	chr10:200400-230400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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