Variant report

Variant	rs73583490
Chromosome Location	chr14:20794951-20794952
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:20794190-20797847	K562	blood:	n/a	n/a
2	POLR2A	chr14:20794590-20796288	HepG2	liver:	n/a	n/a
3	CTCF	chr14:20794840-20794990	AG04449	skin:	n/a	n/a
4	POLR2A	chr14:20793024-20797819	K562	blood:	n/a	n/a
5	POLR2A	chr14:20794337-20795017	H1-hESC	embryonic stem cell:	n/a	n/a
6	ARID3A	chr14:20794949-20795875	HepG2	liver:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:20793979..20796227-chr14:20937472..20939466,2	MCF-7	breast:
2	chr14:20793682..20797138-chr14:20936376..20939221,4	K562	blood:
3	chr14:20792855..20795465-chr14:20809576..20811625,4	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TTC5-4	chr14:20794875-20794952	NONHSAT035560
2	lnc-TTC5-4	chr14:20794875-20794952	NONHSAT035565

No data

Variant related genes	Relation type
SNORD126	TF binding region
ENSG00000222489	TF binding region
ENSG00000198805	Chromatin interaction
ENSG00000259001	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17111188	1.00[EUR][1000 genomes]
rs2229100	1.00[EUR][1000 genomes]
rs3093919	1.00[EUR][1000 genomes]
rs3093929	1.00[EUR][1000 genomes]
rs36219435	1.00[EUR][1000 genomes]
rs61351655	1.00[EUR][1000 genomes]
rs61455440	1.00[EUR][1000 genomes]
rs7143340	1.00[EUR][1000 genomes]
rs7160712	1.00[EUR][1000 genomes]
rs73583407	1.00[EUR][1000 genomes]
rs73587007	1.00[EUR][1000 genomes]
rs73587012	1.00[EUR][1000 genomes]
rs74033863	1.00[EUR][1000 genomes]
rs74033868	1.00[EUR][1000 genomes]
rs8005210	1.00[EUR][1000 genomes]
rs8013332	1.00[EUR][1000 genomes]
rs8016586	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	nsv1037160	chr14:20517485-20901811	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
4	nsv541974	chr14:20517485-20901811	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	103 gene(s)	inside rSNPs	diseases
5	esv1806993	chr14:20743269-20841162	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
6	nsv534131	chr14:20757405-20886235	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	87 gene(s)	inside rSNPs	diseases
7	nsv1042025	chr14:20787961-20817851	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:20774200-20795400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:20774200-20795600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr14:20774200-20795600	Weak transcription	Fetal Heart	heart
4	chr14:20774200-20800400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr14:20774200-20800400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:20774200-20800400	Weak transcription	Fetal Brain Male	brain
7	chr14:20774200-20800400	Weak transcription	Stomach Mucosa	stomach
8	chr14:20774200-20800600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr14:20774200-20800800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:20774200-20800800	Weak transcription	Small Intestine	intestine
11	chr14:20778800-20798600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:20779000-20795600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:20779400-20795000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:20779400-20795000	Strong transcription	Osteobl	bone
15	chr14:20779400-20795200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:20779400-20795200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:20779400-20795400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr14:20779400-20797000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:20779400-20797200	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr14:20779400-20797800	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr14:20779400-20798000	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr14:20779400-20799000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:20779600-20795000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:20779600-20795000	Strong transcription	Liver	Liver
25	chr14:20779600-20795000	Strong transcription	Dnd41	blood
26	chr14:20779600-20795200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:20779600-20795400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:20779600-20795400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:20779600-20795600	Strong transcription	NH-A	brain
30	chr14:20779600-20798200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr14:20779800-20795000	Strong transcription	Stomach Smooth Muscle	stomach
32	chr14:20780000-20795400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:20780200-20795400	Strong transcription	HUVEC	blood vessel
34	chr14:20780400-20795400	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:20781000-20795400	Weak transcription	Brain Angular Gyrus	brain
36	chr14:20781800-20795400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr14:20781800-20798600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr14:20782000-20796800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr14:20782600-20800800	Weak transcription	Esophagus	oesophagus
40	chr14:20784800-20799200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr14:20785400-20795200	Strong transcription	A549	lung
42	chr14:20785600-20795200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr14:20785800-20800400	Weak transcription	Brain Hippocampus Middle	brain
44	chr14:20786000-20795200	Strong transcription	GM12878-XiMat	blood
45	chr14:20786200-20799000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr14:20786200-20800600	Weak transcription	Aorta	Aorta
47	chr14:20786200-20800600	Weak transcription	Colonic Mucosa	Colon
48	chr14:20786400-20800800	Weak transcription	Pancreas	Pancrea
49	chr14:20787200-20795200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr14:20787400-20796800	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links