Variant report

Variant	rs7160712
Chromosome Location	chr14:20921231-20921232
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr14:20921033-20921356	H1-hESC	embryonic stem cell:	n/a	n/a
2	JUND	chr14:20921075-20921346	H1-hESC	embryonic stem cell:	n/a	n/a
3	JUN	chr14:20921056-20921376	HepG2	liver:	n/a	chr14:20921208-20921221
4	JUND	chr14:20921039-20921397	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:20876151..20895555-chr14:20920787..20932243,67	MCF-7	breast:
2	chr14:20807684..20813516-chr14:20919958..20928823,14	K562	blood:
3	chr14:20879246..20888994-chr14:20918445..20930702,42	MCF-7	breast:
4	chr14:20916584..20919855-chr14:20919945..20922892,5	K562	blood:
5	chr14:20799471..20803739-chr14:20921169..20925160,5	MCF-7	breast:
6	chr14:20808270..20815666-chr14:20919802..20926735,19	MCF-7	breast:

No data

Variant related genes	Relation type
OSGEP	TF binding region
APEX1	TF binding region
ENSG00000259001	Chromatin interaction
ENSG00000092094	Chromatin interaction
ENSG00000129566	Chromatin interaction
ENSG00000254846	Chromatin interaction
ENSG00000200225	Chromatin interaction
ENSG00000129484	Chromatin interaction
ENSG00000258515	Chromatin interaction
ENSG00000100814	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10129630	1.00[EUR][1000 genomes]
rs10133099	1.00[AMR][1000 genomes]
rs10142443	1.00[AMR][1000 genomes]
rs17111188	1.00[EUR][1000 genomes]
rs17113250	1.00[EUR][1000 genomes]
rs2163088	1.00[EUR][1000 genomes]
rs2229100	1.00[EUR][1000 genomes]
rs28498996	1.00[EUR][1000 genomes]
rs3093919	1.00[EUR][1000 genomes]
rs3093929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36219435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56713402	1.00[AMR][1000 genomes]
rs61351655	1.00[EUR][1000 genomes]
rs61455440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575070	1.00[EUR][1000 genomes]
rs73583407	1.00[EUR][1000 genomes]
rs73583490	1.00[EUR][1000 genomes]
rs73587007	1.00[EUR][1000 genomes]
rs73587012	1.00[EUR][1000 genomes]
rs73587064	1.00[AMR][1000 genomes]
rs73587074	1.00[AMR][1000 genomes]
rs73587075	1.00[AMR][1000 genomes]
rs73587082	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74033863	1.00[EUR][1000 genomes]
rs74033868	1.00[EUR][1000 genomes]
rs8005210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8006448	1.00[EUR][1000 genomes]
rs8013332	1.00[EUR][1000 genomes]
rs8016586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:20909000-20921600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:20910600-20921400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr14:20911000-20922200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:20911600-20922200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:20912000-20921400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:20912400-20921400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:20913000-20921600	Strong transcription	Fetal Stomach	stomach
8	chr14:20913400-20921400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:20913600-20921400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:20913600-20921400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:20916600-20922400	Weak transcription	Stomach Mucosa	stomach
12	chr14:20917800-20922000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr14:20918800-20921400	Weak transcription	Colonic Mucosa	Colon
14	chr14:20918800-20921600	Weak transcription	Fetal Brain Male	brain
15	chr14:20918800-20922400	Weak transcription	Gastric	stomach
16	chr14:20920400-20921800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr14:20920400-20921800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr14:20920400-20922400	Weak transcription	HSMMtube	muscle
19	chr14:20920600-20921400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr14:20920600-20921400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:20920600-20921400	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr14:20920600-20921600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr14:20920600-20921600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr14:20920600-20921600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr14:20920600-20921600	Weak transcription	Fetal Intestine Small	intestine
26	chr14:20920600-20921600	Weak transcription	Pancreas	Pancrea
27	chr14:20920600-20921600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr14:20920600-20921800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:20920600-20921800	Weak transcription	Aorta	Aorta
30	chr14:20920600-20921800	Weak transcription	Right Ventricle	heart
31	chr14:20920600-20921800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr14:20920600-20921800	Weak transcription	HMEC	breast
33	chr14:20920600-20921800	Weak transcription	NHEK	skin
34	chr14:20920600-20921800	Weak transcription	NHLF	lung
35	chr14:20920600-20922000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr14:20920600-20922000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr14:20920600-20922000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr14:20920600-20922200	Weak transcription	Fetal Kidney	kidney
39	chr14:20920600-20922200	Weak transcription	NHDF-Ad	bronchial
40	chr14:20920600-20922400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr14:20920600-20922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:20920600-20922400	Weak transcription	Esophagus	oesophagus
43	chr14:20920600-20922400	Weak transcription	Ovary	ovary
44	chr14:20920600-20922400	Weak transcription	Small Intestine	intestine
45	chr14:20920600-20922600	Weak transcription	Lung	lung
46	chr14:20920800-20921400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr14:20920800-20921400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr14:20920800-20921400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr14:20920800-20921400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:20920800-20921400	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links