Variant report

Variant	rs8006448
Chromosome Location	chr14:21030950-21030951
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10129630	1.00[EUR][1000 genomes]
rs17111188	1.00[EUR][1000 genomes]
rs17113250	1.00[EUR][1000 genomes]
rs2163088	1.00[EUR][1000 genomes]
rs28498996	1.00[EUR][1000 genomes]
rs36219435	1.00[EUR][1000 genomes]
rs7160712	1.00[EUR][1000 genomes]
rs73575070	1.00[EUR][1000 genomes]
rs73587007	1.00[EUR][1000 genomes]
rs73587012	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv901468	chr14:20997221-21149785	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1051489	chr14:21026592-21214763	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21024800-21036600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:21026200-21037200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:21026800-21047000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:21027400-21031800	Weak transcription	Placenta	Placenta
5	chr14:21028200-21031600	Weak transcription	K562	blood
6	chr14:21028200-21032600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:21028200-21032800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:21029400-21032600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:21029400-21032600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr14:21029400-21036400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:21029600-21032600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:21029600-21033000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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