Variant report

Variant	rs73583651
Chromosome Location	chr8:52842439-52842440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11551686	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541846	1.00[ASN][1000 genomes]
rs12543540	1.00[ASN][1000 genomes]
rs12544903	1.00[ASN][1000 genomes]
rs12545812	0.93[ASN][1000 genomes]
rs12545881	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28451175	1.00[ASN][1000 genomes]
rs56117807	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6473665	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6473666	0.85[AFR][1000 genomes]
rs6993171	1.00[ASN][1000 genomes]
rs7015360	1.00[ASN][1000 genomes]
rs73583663	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7819631	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9643465	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv831316	chr8:52660353-52842928	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52814200-52850000	Weak transcription	Spleen	Spleen
2	chr8:52815000-52852000	Weak transcription	Colon Smooth Muscle	Colon
3	chr8:52822600-52860200	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:52831800-52858400	Weak transcription	Primary T cells from cord blood	blood
5	chr8:52831800-52863400	Weak transcription	Aorta	Aorta
6	chr8:52837800-52851800	Weak transcription	Ovary	ovary
7	chr8:52838000-52853400	Weak transcription	Esophagus	oesophagus
8	chr8:52840200-52842600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr8:52841000-52843800	Enhancers	HUVEC	blood vessel
10	chr8:52841600-52852000	Weak transcription	Lung	lung
11	chr8:52841800-52844600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr8:52841800-52845200	Weak transcription	Psoas Muscle	Psoas
13	chr8:52842200-52843600	Weak transcription	Pancreas	Pancrea
14	chr8:52842200-52845800	Weak transcription	Right Atrium	heart
15	chr8:52842200-52851800	Weak transcription	Left Ventricle	heart
16	chr8:52842400-52843800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr8:52842400-52850800	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links