Variant report

Variant	rs73583663
Chromosome Location	chr8:52868696-52868697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11551686	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12541846	0.93[ASN][1000 genomes]
rs12543540	0.93[ASN][1000 genomes]
rs12544903	0.93[ASN][1000 genomes]
rs12545812	0.86[ASN][1000 genomes]
rs12545881	0.93[ASN][1000 genomes]
rs2138297	0.88[AFR][1000 genomes]
rs2176119	0.88[AFR][1000 genomes]
rs28451175	0.93[ASN][1000 genomes]
rs56117807	0.90[ASN][1000 genomes]
rs6473665	0.93[ASN][1000 genomes]
rs6993171	0.93[ASN][1000 genomes]
rs7015360	0.93[ASN][1000 genomes]
rs73583651	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7819631	0.93[ASN][1000 genomes]
rs7833668	0.82[AFR][1000 genomes]
rs7834181	0.86[AFR][1000 genomes]
rs7838307	0.86[AFR][1000 genomes]
rs9643465	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1018429	chr8:52411443-52878946	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1034856	chr8:52411443-52886765	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52852000-52870000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr8:52861200-52870000	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:52867000-52873800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:52867800-52869000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr8:52867800-52870000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:52868200-52873600	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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