Variant report

Variant	rs73584652
Chromosome Location	chr6:128401710-128401711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128401254..128402898-chr6:128838085..128840058,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11962559	0.89[AFR][1000 genomes]
rs60472422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584658	0.94[AFR][1000 genomes]
rs73584660	0.94[AFR][1000 genomes]
rs73584662	0.94[AFR][1000 genomes]
rs73584667	0.94[AFR][1000 genomes]
rs73584669	0.84[AFR][1000 genomes]
rs73584673	0.84[AFR][1000 genomes]
rs73584678	0.84[AFR][1000 genomes]
rs73584680	0.94[AFR][1000 genomes]
rs73584686	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
2	chr6:128347000-128405200	Weak transcription	Lung	lung
3	chr6:128370000-128412600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:128372400-128412200	Weak transcription	Placenta	Placenta
5	chr6:128374600-128419400	Weak transcription	Esophagus	oesophagus
6	chr6:128375000-128419400	Weak transcription	Gastric	stomach
7	chr6:128375000-128433800	Weak transcription	Aorta	Aorta
8	chr6:128375600-128413000	Weak transcription	Colonic Mucosa	Colon
9	chr6:128377800-128403400	Weak transcription	Fetal Kidney	kidney
10	chr6:128379000-128432800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:128379400-128412200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:128385800-128406400	Weak transcription	Primary T cells from cord blood	blood
13	chr6:128385800-128419400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:128388600-128403000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:128388600-128412800	Weak transcription	Fetal Lung	lung
16	chr6:128388800-128407800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:128388800-128411600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:128389000-128409800	Weak transcription	Thymus	Thymus
19	chr6:128389000-128411400	Weak transcription	Adipose Nuclei	Adipose
20	chr6:128389000-128412800	Weak transcription	NHLF	lung
21	chr6:128389000-128419400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:128389000-128419400	Weak transcription	Pancreas	Pancrea
23	chr6:128389600-128403400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:128389600-128407600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:128389600-128409200	Weak transcription	Fetal Intestine Small	intestine
26	chr6:128389600-128409200	Weak transcription	Fetal Stomach	stomach
27	chr6:128389600-128409800	Weak transcription	Ovary	ovary
28	chr6:128389600-128410000	Weak transcription	NHEK	skin
29	chr6:128389600-128410600	Weak transcription	Left Ventricle	heart
30	chr6:128389600-128410800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:128389600-128417600	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:128389600-128418200	Weak transcription	Brain Substantia Nigra	brain
33	chr6:128389600-128419400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:128390200-128412600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:128390600-128403400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:128390800-128403400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:128390800-128415000	Weak transcription	NHDF-Ad	bronchial
38	chr6:128390800-128419600	Weak transcription	NH-A	brain
39	chr6:128391200-128403400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:128391600-128402200	Strong transcription	Primary B cells from cord blood	blood
41	chr6:128392800-128405200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:128395400-128417400	Weak transcription	Fetal Heart	heart
43	chr6:128395600-128404800	Weak transcription	Brain Anterior Caudate	brain
44	chr6:128396200-128406800	Strong transcription	HepG2	liver
45	chr6:128396600-128402600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:128397400-128404600	Strong transcription	Liver	Liver
47	chr6:128398600-128412600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:128398800-128403400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:128398800-128419400	Weak transcription	HMEC	breast
50	chr6:128399000-128418000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links