Variant report

Variant	rs73584680
Chromosome Location	chr6:128416157-128416158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11962559	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60472422	0.94[AFR][1000 genomes]
rs73584650	0.91[AFR][1000 genomes]
rs73584652	0.94[AFR][1000 genomes]
rs73584658	0.94[AFR][1000 genomes]
rs73584660	0.94[AFR][1000 genomes]
rs73584662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584669	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584673	0.89[AFR][1000 genomes]
rs73584678	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv516794	chr6:128403745-128430506	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
2	chr6:128374600-128419400	Weak transcription	Esophagus	oesophagus
3	chr6:128375000-128419400	Weak transcription	Gastric	stomach
4	chr6:128375000-128433800	Weak transcription	Aorta	Aorta
5	chr6:128379000-128432800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:128385800-128419400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:128389000-128419400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:128389000-128419400	Weak transcription	Pancreas	Pancrea
9	chr6:128389600-128417600	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:128389600-128418200	Weak transcription	Brain Substantia Nigra	brain
11	chr6:128389600-128419400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:128390800-128419600	Weak transcription	NH-A	brain
13	chr6:128395400-128417400	Weak transcription	Fetal Heart	heart
14	chr6:128398800-128419400	Weak transcription	HMEC	breast
15	chr6:128399000-128418000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:128399000-128422600	Weak transcription	HUVEC	blood vessel
17	chr6:128399200-128419200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:128399400-128417600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:128401400-128419400	Weak transcription	Small Intestine	intestine
20	chr6:128401400-128431800	Weak transcription	Right Ventricle	heart
21	chr6:128401600-128419600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:128401800-128433600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:128403800-128417400	Weak transcription	Fetal Kidney	kidney
24	chr6:128403800-128419400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:128403800-128420800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:128403800-128421600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:128404000-128419200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:128404000-128438000	Weak transcription	Fetal Thymus	thymus
29	chr6:128404400-128422000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:128404600-128417600	Weak transcription	Liver	Liver
31	chr6:128405000-128431400	Weak transcription	Primary B cells from cord blood	blood
32	chr6:128406600-128433000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:128410400-128421200	Weak transcription	NHEK	skin
34	chr6:128411000-128417800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:128411000-128419400	Weak transcription	Osteobl	bone
36	chr6:128411000-128433600	Weak transcription	HSMMtube	muscle
37	chr6:128411200-128417200	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:128411200-128418200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:128411200-128419400	Weak transcription	Left Ventricle	heart
40	chr6:128411200-128419800	Weak transcription	HSMM	muscle
41	chr6:128411200-128420800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:128411200-128424600	Weak transcription	Fetal Intestine Small	intestine
43	chr6:128411200-128433800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:128411200-128433800	Weak transcription	Fetal Stomach	stomach
45	chr6:128411200-128433800	Weak transcription	Ovary	ovary
46	chr6:128411400-128418600	Weak transcription	Fetal Intestine Large	intestine
47	chr6:128411600-128445600	Weak transcription	HepG2	liver
48	chr6:128414600-128419200	Weak transcription	Fetal Brain Female	brain

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