Variant report

Variant	rs7358512
Chromosome Location	chr11:9828146-9828147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12281244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9803200-9828600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:9803200-9828600	Weak transcription	Gastric	stomach
3	chr11:9803200-9828800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr11:9806800-9828600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:9808400-9828800	Weak transcription	Fetal Kidney	kidney
6	chr11:9809600-9828600	Weak transcription	Esophagus	oesophagus
7	chr11:9809600-9832600	Weak transcription	Colonic Mucosa	Colon
8	chr11:9809800-9828600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:9810000-9829200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr11:9810200-9828400	Weak transcription	Primary T cells from cord blood	blood
11	chr11:9810200-9829200	Weak transcription	Fetal Brain Male	brain
12	chr11:9810800-9828600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:9810800-9829000	Weak transcription	Right Ventricle	heart
14	chr11:9811000-9828600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:9811600-9828600	Weak transcription	Dnd41	blood
16	chr11:9811600-9828600	Weak transcription	HUVEC	blood vessel
17	chr11:9811600-9828800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:9811600-9828800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:9811800-9828400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:9811800-9828600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:9811800-9828800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:9811800-9828800	Weak transcription	Brain Germinal Matrix	brain
23	chr11:9811800-9828800	Weak transcription	Lung	lung
24	chr11:9811800-9828800	Weak transcription	Thymus	Thymus
25	chr11:9812000-9828400	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:9812200-9862200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:9812400-9828400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:9818600-9881400	Weak transcription	Spleen	Spleen
29	chr11:9820000-9828600	Weak transcription	Pancreas	Pancrea
30	chr11:9820200-9828600	Weak transcription	Fetal Brain Female	brain
31	chr11:9820400-9828600	Weak transcription	Fetal Intestine Small	intestine
32	chr11:9821400-9828600	Weak transcription	Fetal Lung	lung
33	chr11:9821800-9830000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:9824200-9837200	Weak transcription	Hela-S3	cervix
35	chr11:9824200-9867600	Weak transcription	Psoas Muscle	Psoas
36	chr11:9824400-9828600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:9824400-9828600	Weak transcription	Brain Substantia Nigra	brain
38	chr11:9824400-9828600	Weak transcription	HepG2	liver
39	chr11:9824400-9831800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:9824400-9841400	Weak transcription	Fetal Heart	heart
41	chr11:9824600-9828400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:9824600-9828600	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:9824600-9828800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr11:9824800-9831400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr11:9824800-9834400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr11:9825200-9828600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:9825400-9828400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:9825400-9838600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr11:9825600-9828200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:9825600-9828600	Weak transcription	H1 Cell Line	embryonic stem cell

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