Variant report

Variant	rs73586372
Chromosome Location	chr6:142844957-142844958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2328347	0.85[AMR][1000 genomes]
rs59546093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61162587	0.85[AMR][1000 genomes]
rs73586370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586377	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142840600-142846800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:142843200-142846000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:142843400-142846000	Enhancers	Fetal Lung	lung
4	chr6:142843600-142845200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:142844000-142845400	Enhancers	Brain Germinal Matrix	brain
6	chr6:142844200-142845000	Weak transcription	Fetal Stomach	stomach
7	chr6:142844200-142845000	Enhancers	Stomach Smooth Muscle	stomach
8	chr6:142844200-142845200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:142844400-142845000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:142844400-142845400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:142844600-142845000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:142844600-142845600	Enhancers	Fetal Brain Male	brain
13	chr6:142844800-142845200	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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