Variant report

Variant	rs61162587
Chromosome Location	chr6:142851488-142851489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1329706	0.83[AMR][1000 genomes]
rs2328347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56674756	0.83[AMR][1000 genomes]
rs59546093	0.85[AMR][1000 genomes]
rs60185388	0.83[AMR][1000 genomes]
rs60221603	0.83[AMR][1000 genomes]
rs60259179	0.83[AMR][1000 genomes]
rs60830402	0.83[AMR][1000 genomes]
rs60888502	0.83[AMR][1000 genomes]
rs61231068	0.83[AMR][1000 genomes]
rs73580474	0.83[AMR][1000 genomes]
rs73582544	0.83[AMR][1000 genomes]
rs73582555	0.83[AMR][1000 genomes]
rs73582556	0.83[AMR][1000 genomes]
rs73582558	0.83[AMR][1000 genomes]
rs73582562	0.83[AMR][1000 genomes]
rs73582565	0.83[AMR][1000 genomes]
rs73582566	0.83[AMR][1000 genomes]
rs73582567	0.83[AMR][1000 genomes]
rs73582568	0.83[AMR][1000 genomes]
rs73582569	0.83[AMR][1000 genomes]
rs73582571	0.83[AMR][1000 genomes]
rs73582577	0.83[AMR][1000 genomes]
rs73584559	0.83[AMR][1000 genomes]
rs73584561	0.83[AMR][1000 genomes]
rs73584562	0.83[AMR][1000 genomes]
rs73584564	0.83[AMR][1000 genomes]
rs73584567	0.83[AMR][1000 genomes]
rs73584570	0.83[AMR][1000 genomes]
rs73584575	0.83[AMR][1000 genomes]
rs73584577	0.83[AMR][1000 genomes]
rs73586306	0.83[AMR][1000 genomes]
rs73586307	0.83[AMR][1000 genomes]
rs73586310	0.83[AMR][1000 genomes]
rs73586311	0.83[AMR][1000 genomes]
rs73586370	0.85[AMR][1000 genomes]
rs73586372	0.85[AMR][1000 genomes]
rs73586374	0.83[AMR][1000 genomes]
rs73586377	0.85[AMR][1000 genomes]
rs73586385	0.83[AMR][1000 genomes]
rs73586390	0.83[AMR][1000 genomes]
rs73586391	0.83[AMR][1000 genomes]
rs73588304	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142846600-142865600	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links