Variant report

Variant	rs73586374
Chromosome Location	chr6:142846289-142846290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1329706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2328347	0.83[AMR][1000 genomes]
rs56674756	1.00[AMR][1000 genomes]
rs59051385	0.83[AMR][1000 genomes]
rs60185388	1.00[AMR][1000 genomes]
rs60221603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60259179	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60830402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60888502	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61162587	0.83[AMR][1000 genomes]
rs61231068	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580474	1.00[AMR][1000 genomes]
rs73582544	1.00[AMR][1000 genomes]
rs73582555	1.00[AMR][1000 genomes]
rs73582556	1.00[AMR][1000 genomes]
rs73582558	1.00[AMR][1000 genomes]
rs73582562	1.00[AMR][1000 genomes]
rs73582565	1.00[AMR][1000 genomes]
rs73582566	1.00[AMR][1000 genomes]
rs73582567	1.00[AMR][1000 genomes]
rs73582568	1.00[AMR][1000 genomes]
rs73582569	1.00[AMR][1000 genomes]
rs73582571	1.00[AMR][1000 genomes]
rs73582577	1.00[AMR][1000 genomes]
rs73584559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584562	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584564	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584570	1.00[AMR][1000 genomes]
rs73584575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586304	1.00[AFR][1000 genomes]
rs73586306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586379	0.88[AFR][1000 genomes]
rs73586382	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73586385	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586391	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588304	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142840600-142846800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:142846200-142846800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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