Variant report

Variant	rs73584562
Chromosome Location	chr6:142829967-142829968
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142822658..142824283-chr6:142828599..142831339,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1329706	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2328347	0.83[AMR][1000 genomes]
rs56674756	1.00[AMR][1000 genomes]
rs59051385	0.83[AMR][1000 genomes]
rs60185388	1.00[AMR][1000 genomes]
rs60221603	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60259179	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60830402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60888502	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61162587	0.83[AMR][1000 genomes]
rs61231068	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580474	1.00[AMR][1000 genomes]
rs73582544	1.00[AMR][1000 genomes]
rs73582555	1.00[AMR][1000 genomes]
rs73582556	1.00[AMR][1000 genomes]
rs73582558	1.00[AMR][1000 genomes]
rs73582562	1.00[AMR][1000 genomes]
rs73582565	1.00[AMR][1000 genomes]
rs73582566	1.00[AMR][1000 genomes]
rs73582567	1.00[AMR][1000 genomes]
rs73582568	1.00[AMR][1000 genomes]
rs73582569	1.00[AMR][1000 genomes]
rs73582571	1.00[AMR][1000 genomes]
rs73582577	1.00[AMR][1000 genomes]
rs73584559	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584561	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584564	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584567	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584570	1.00[AMR][1000 genomes]
rs73584575	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584577	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586304	0.95[AFR][1000 genomes]
rs73586306	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586310	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586311	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586374	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586379	0.83[AFR][1000 genomes]
rs73586382	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73586385	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586390	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586391	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588304	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142828800-142832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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