Variant report
Variant | rs60830402 |
---|---|
Chromosome Location | chr6:142848614-142848615 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:2 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-HIVEP2-5 | chr6:142847592-142849520 | XLOC_005862 |
2 | lnc-HIVEP2-5 | chr6:142847592-142849520 | XLOC_005862 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1329706 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2328347 | 0.83[AMR][1000 genomes] |
rs56674756 | 1.00[AMR][1000 genomes] |
rs59051385 | 0.83[AMR][1000 genomes] |
rs60185388 | 1.00[AMR][1000 genomes] |
rs60221603 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60259179 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60888502 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs61162587 | 0.83[AMR][1000 genomes] |
rs61231068 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73580474 | 1.00[AMR][1000 genomes] |
rs73582544 | 1.00[AMR][1000 genomes] |
rs73582555 | 1.00[AMR][1000 genomes] |
rs73582556 | 1.00[AMR][1000 genomes] |
rs73582558 | 1.00[AMR][1000 genomes] |
rs73582562 | 1.00[AMR][1000 genomes] |
rs73582565 | 1.00[AMR][1000 genomes] |
rs73582566 | 1.00[AMR][1000 genomes] |
rs73582567 | 1.00[AMR][1000 genomes] |
rs73582568 | 1.00[AMR][1000 genomes] |
rs73582569 | 1.00[AMR][1000 genomes] |
rs73582571 | 1.00[AMR][1000 genomes] |
rs73582577 | 1.00[AMR][1000 genomes] |
rs73584559 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73584561 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73584562 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73584564 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73584567 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73584570 | 1.00[AMR][1000 genomes] |
rs73584575 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73584577 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73586304 | 1.00[AFR][1000 genomes] |
rs73586306 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73586307 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73586310 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73586311 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73586374 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73586379 | 0.88[AFR][1000 genomes] |
rs73586382 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rs73586385 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73586390 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73586391 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73588304 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949088 | chr6:142561402-143128849 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1023426 | chr6:142813845-142940262 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv830827 | chr6:142840734-143015005 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:142846600-142865600 | Weak transcription | Right Atrium | heart |