Variant report
| Variant | rs73584570 |
|---|---|
| Chromosome Location | chr6:142831322-142831323 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:142822658..142824283-chr6:142828599..142831339,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs1329706 | 1.00[AMR][1000 genomes] |
| rs2328347 | 0.83[AMR][1000 genomes] |
| rs56674756 | 1.00[AMR][1000 genomes] |
| rs59051385 | 0.83[AMR][1000 genomes] |
| rs60185388 | 1.00[AMR][1000 genomes] |
| rs60221603 | 1.00[AMR][1000 genomes] |
| rs60259179 | 1.00[AMR][1000 genomes] |
| rs60830402 | 1.00[AMR][1000 genomes] |
| rs60888502 | 1.00[AMR][1000 genomes] |
| rs61162587 | 0.83[AMR][1000 genomes] |
| rs61231068 | 1.00[AMR][1000 genomes] |
| rs73580474 | 1.00[AMR][1000 genomes] |
| rs73582544 | 1.00[AMR][1000 genomes] |
| rs73582555 | 1.00[AMR][1000 genomes] |
| rs73582556 | 1.00[AMR][1000 genomes] |
| rs73582558 | 1.00[AMR][1000 genomes] |
| rs73582562 | 1.00[AMR][1000 genomes] |
| rs73582565 | 1.00[AMR][1000 genomes] |
| rs73582566 | 1.00[AMR][1000 genomes] |
| rs73582567 | 1.00[AMR][1000 genomes] |
| rs73582568 | 1.00[AMR][1000 genomes] |
| rs73582569 | 1.00[AMR][1000 genomes] |
| rs73582571 | 1.00[AMR][1000 genomes] |
| rs73582577 | 1.00[AMR][1000 genomes] |
| rs73584559 | 1.00[AMR][1000 genomes] |
| rs73584561 | 1.00[AMR][1000 genomes] |
| rs73584562 | 1.00[AMR][1000 genomes] |
| rs73584564 | 1.00[AMR][1000 genomes] |
| rs73584567 | 1.00[AMR][1000 genomes] |
| rs73584575 | 1.00[AMR][1000 genomes] |
| rs73584577 | 1.00[AMR][1000 genomes] |
| rs73586306 | 1.00[AMR][1000 genomes] |
| rs73586307 | 1.00[AMR][1000 genomes] |
| rs73586310 | 1.00[AMR][1000 genomes] |
| rs73586311 | 1.00[AMR][1000 genomes] |
| rs73586374 | 1.00[AMR][1000 genomes] |
| rs73586382 | 0.83[AMR][1000 genomes] |
| rs73586385 | 1.00[AMR][1000 genomes] |
| rs73586390 | 1.00[AMR][1000 genomes] |
| rs73586391 | 1.00[AMR][1000 genomes] |
| rs73588304 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949088 | chr6:142561402-143128849 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023426 | chr6:142813845-142940262 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:142828800-142832000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr6:142831200-142831400 | Flanking Active TSS | HSMMtube | muscle |
| 3 | chr6:142831200-142832200 | Enhancers | Fetal Muscle Leg | muscle |
| 4 | chr6:142831200-142832200 | Enhancers | Fetal Stomach | stomach |
