Variant report

Variant	rs60259179
Chromosome Location	chr6:142857089-142857090
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1329706	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2328347	0.83[AMR][1000 genomes]
rs56674756	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58758475	0.84[AFR][1000 genomes]
rs59051385	0.83[AMR][1000 genomes]
rs60185388	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60221603	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60830402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60888502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61162587	0.83[AMR][1000 genomes]
rs61231068	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73580470	0.84[AFR][1000 genomes]
rs73580473	0.84[AFR][1000 genomes]
rs73580474	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582544	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582555	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582556	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582558	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582562	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582565	1.00[AMR][1000 genomes]
rs73582566	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582567	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582568	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73582569	1.00[AMR][1000 genomes]
rs73582571	1.00[AMR][1000 genomes]
rs73582577	1.00[AMR][1000 genomes]
rs73584559	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584561	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584562	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584564	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584567	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584570	1.00[AMR][1000 genomes]
rs73584575	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584577	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586304	0.95[AFR][1000 genomes]
rs73586306	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586310	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586311	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586374	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586379	0.83[AFR][1000 genomes]
rs73586382	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73586385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588304	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142846600-142865600	Weak transcription	Right Atrium	heart
2	chr6:142856800-142857200	Weak transcription	HMEC	breast
3	chr6:142856800-142858000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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