Variant report

Variant	rs73588423
Chromosome Location	chr6:143262333-143262334
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143255723..143258241-chr6:143260281..143262447,2	MCF-7	breast:
2	chr6:143027223..143029378-chr6:143260889..143263783,2	MCF-7	breast:
3	chr6:143253110..143256505-chr6:143258284..143262684,4	K562	blood:
4	chr6:143247603..143250539-chr6:143261242..143263408,2	K562	blood:
5	chr6:143261291..143263976-chr6:143267791..143270142,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59123279	0.83[AMR][1000 genomes]
rs6924686	1.00[EUR][1000 genomes]
rs73588427	0.83[AMR][1000 genomes]
rs7766704	0.83[AMR][1000 genomes]
rs9484678	0.83[AMR][1000 genomes]
rs9496484	0.83[AMR][1000 genomes]
rs9496485	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143248600-143265000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143249000-143263800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:143249400-143264600	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:143249600-143263800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:143255600-143263400	Weak transcription	Fetal Heart	heart
6	chr6:143255600-143263400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:143255600-143263600	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:143255800-143263800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:143256000-143263600	Weak transcription	Stomach Mucosa	stomach
10	chr6:143256200-143263000	Weak transcription	HepG2	liver
11	chr6:143256200-143265000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr6:143256200-143265000	Weak transcription	Aorta	Aorta
13	chr6:143256600-143264600	Weak transcription	Small Intestine	intestine
14	chr6:143256600-143265000	Weak transcription	Esophagus	oesophagus
15	chr6:143256600-143265000	Weak transcription	Lung	lung
16	chr6:143256800-143265600	Weak transcription	Spleen	Spleen
17	chr6:143257000-143264000	Weak transcription	Adipose Nuclei	Adipose
18	chr6:143257200-143263000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr6:143257200-143265000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:143257600-143263400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:143257800-143264600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:143258200-143263400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:143259000-143264200	Enhancers	Brain Hippocampus Middle	brain
24	chr6:143259600-143263800	Enhancers	Dnd41	blood
25	chr6:143259600-143265000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:143259800-143262400	Enhancers	Fetal Thymus	thymus
27	chr6:143260000-143263400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:143260000-143263400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:143260000-143263400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr6:143260000-143264200	Weak transcription	Fetal Lung	lung
31	chr6:143260000-143264200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr6:143260200-143263400	Enhancers	Primary T cells fromperipheralblood	blood
33	chr6:143260200-143264200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:143260400-143263000	Enhancers	Osteobl	bone
35	chr6:143260400-143265000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr6:143260600-143264200	Weak transcription	Brain Anterior Caudate	brain
37	chr6:143260600-143264800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:143260800-143263000	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr6:143260800-143263400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr6:143261000-143264200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:143261400-143262600	Enhancers	NH-A	brain
42	chr6:143261400-143262800	Enhancers	HUVEC	blood vessel
43	chr6:143261400-143263000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
44	chr6:143261400-143263000	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr6:143261400-143263200	Flanking Active TSS	GM12878-XiMat	blood
46	chr6:143261400-143263200	Enhancers	HMEC	breast
47	chr6:143261400-143264400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr6:143261400-143264600	Enhancers	Brain Angular Gyrus	brain
49	chr6:143261400-143265000	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr6:143261600-143262400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

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