Variant report

Variant	rs59123279
Chromosome Location	chr6:143263406-143263407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143027223..143029378-chr6:143260889..143263783,2	MCF-7	breast:
2	chr6:143247603..143250539-chr6:143261242..143263408,2	K562	blood:
3	chr6:143261291..143263976-chr6:143267791..143270142,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73588423	0.83[AMR][1000 genomes]
rs73588427	1.00[AMR][1000 genomes]
rs7766704	1.00[AMR][1000 genomes]
rs7768273	0.83[AMR][1000 genomes]
rs9484678	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484679	0.83[AFR][1000 genomes]
rs9496484	1.00[AMR][1000 genomes]
rs9496485	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143248600-143265000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143249000-143263800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:143249400-143264600	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:143249600-143263800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:143255600-143263600	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:143255800-143263800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:143256000-143263600	Weak transcription	Stomach Mucosa	stomach
8	chr6:143256200-143265000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:143256200-143265000	Weak transcription	Aorta	Aorta
10	chr6:143256600-143264600	Weak transcription	Small Intestine	intestine
11	chr6:143256600-143265000	Weak transcription	Esophagus	oesophagus
12	chr6:143256600-143265000	Weak transcription	Lung	lung
13	chr6:143256800-143265600	Weak transcription	Spleen	Spleen
14	chr6:143257000-143264000	Weak transcription	Adipose Nuclei	Adipose
15	chr6:143257200-143265000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:143257800-143264600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:143259000-143264200	Enhancers	Brain Hippocampus Middle	brain
18	chr6:143259600-143263800	Enhancers	Dnd41	blood
19	chr6:143259600-143265000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:143260000-143264200	Weak transcription	Fetal Lung	lung
21	chr6:143260000-143264200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr6:143260200-143264200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:143260400-143265000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr6:143260600-143264200	Weak transcription	Brain Anterior Caudate	brain
25	chr6:143260600-143264800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:143261000-143264200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:143261400-143264400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr6:143261400-143264600	Enhancers	Brain Angular Gyrus	brain
29	chr6:143261400-143265000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr6:143261600-143264200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:143261600-143264400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:143261600-143264600	Enhancers	NHEK	skin
33	chr6:143261600-143264800	Enhancers	NHLF	lung
34	chr6:143261800-143265000	Enhancers	Brain Substantia Nigra	brain
35	chr6:143262000-143264000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:143262000-143264000	Weak transcription	Liver	Liver
37	chr6:143262000-143264200	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:143262000-143264600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr6:143262000-143264600	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:143262000-143264800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr6:143262000-143265000	Weak transcription	Left Ventricle	heart
42	chr6:143262000-143265000	Weak transcription	Pancreas	Pancrea
43	chr6:143262200-143263800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr6:143262200-143264400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:143262200-143264600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:143262200-143264600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:143262200-143264800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:143262400-143263600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr6:143262400-143263800	Weak transcription	Primary B cells from cord blood	blood
50	chr6:143262400-143264000	Weak transcription	Fetal Thymus	thymus

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