Variant report

Variant	rs73591640
Chromosome Location	chr16:82483180-82483181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr16:82482828-82483266	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82480682..82483219-chr16:82488097..82490415,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238321	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10514540	0.87[AMR][1000 genomes]
rs11862988	1.00[EUR][1000 genomes]
rs11863613	1.00[EUR][1000 genomes]
rs11863973	1.00[EUR][1000 genomes]
rs16957345	0.81[EUR][1000 genomes]
rs16957377	1.00[EUR][1000 genomes]
rs16957380	1.00[EUR][1000 genomes]
rs16957404	1.00[EUR][1000 genomes]
rs16957411	1.00[EUR][1000 genomes]
rs16957416	1.00[EUR][1000 genomes]
rs16957435	1.00[EUR][1000 genomes]
rs16957439	1.00[EUR][1000 genomes]
rs4783018	1.00[EUR][1000 genomes]
rs4783020	1.00[EUR][1000 genomes]
rs4783042	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73591641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73591650	1.00[EUR][1000 genomes]
rs73591655	1.00[EUR][1000 genomes]
rs73591657	1.00[EUR][1000 genomes]
rs73591659	1.00[EUR][1000 genomes]
rs73591663	1.00[EUR][1000 genomes]
rs73591672	1.00[EUR][1000 genomes]
rs9888867	0.81[EUR][1000 genomes]
rs9888928	0.81[EUR][1000 genomes]
rs9889105	0.81[EUR][1000 genomes]
rs9889106	0.81[EUR][1000 genomes]
rs9889113	0.81[EUR][1000 genomes]
rs9889114	0.81[EUR][1000 genomes]
rs9938533	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82483000-82483200	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr16:82483000-82483800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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