Variant report

Variant	rs9888928
Chromosome Location	chr16:82481657-82481658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82480682..82483219-chr16:82488097..82490415,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1019958	0.82[ASN][1000 genomes]
rs1073330	0.87[ASN][1000 genomes]
rs11150460	0.83[ASN][1000 genomes]
rs11859696	0.84[JPT][hapmap]
rs11862988	0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs11863613	0.81[EUR][1000 genomes]
rs11863973	0.81[EUR][1000 genomes]
rs11866997	0.84[JPT][hapmap]
rs1424051	0.96[ASN][1000 genomes]
rs1424052	0.96[ASN][1000 genomes]
rs1424053	0.96[ASN][1000 genomes]
rs1593129	0.89[ASN][1000 genomes]
rs16957345	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16957377	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs16957380	0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs16957404	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs16957411	0.81[EUR][1000 genomes]
rs16957416	0.81[EUR][1000 genomes]
rs16957435	0.81[EUR][1000 genomes]
rs16957439	0.81[EUR][1000 genomes]
rs1962868	0.82[ASN][1000 genomes]
rs3843714	0.82[ASN][1000 genomes]
rs3843715	0.82[ASN][1000 genomes]
rs3843717	0.82[ASN][1000 genomes]
rs3843718	0.83[ASN][1000 genomes]
rs3848292	0.82[ASN][1000 genomes]
rs4783018	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs4783020	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs4783042	0.81[EUR][1000 genomes]
rs73591640	0.81[EUR][1000 genomes]
rs73591641	0.81[EUR][1000 genomes]
rs73591650	0.81[EUR][1000 genomes]
rs73591655	0.81[EUR][1000 genomes]
rs73591657	0.81[EUR][1000 genomes]
rs73591659	0.81[EUR][1000 genomes]
rs73591663	0.81[EUR][1000 genomes]
rs73591672	0.81[EUR][1000 genomes]
rs8044445	0.84[JPT][hapmap]
rs8044486	0.83[JPT][hapmap]
rs8048101	0.82[ASN][1000 genomes]
rs8060446	0.82[JPT][hapmap]
rs8064207	0.81[ASN][1000 genomes]
rs929877	0.82[ASN][1000 genomes]
rs9888867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9889105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9889106	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9889113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9889114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927644	0.85[ASN][1000 genomes]
rs9931044	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9936929	0.85[ASN][1000 genomes]
rs9938533	0.84[EUR][1000 genomes]
rs9939482	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82481400-82483000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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