Variant report

Variant	rs73592525
Chromosome Location	chr10:21665279-21665280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11819174	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57027548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57453223	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61528738	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61610725	0.87[AMR][1000 genomes]
rs73592517	0.87[AMR][1000 genomes]
rs73592518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592528	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21654000-21676800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:21654200-21681400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:21662400-21666000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:21662400-21666200	Enhancers	A549	lung
5	chr10:21662400-21668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:21662400-21668200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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