Variant report

Variant	rs73592528
Chromosome Location	chr10:21682264-21682265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11819174	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57027548	1.00[AMR][1000 genomes]
rs57453223	1.00[AMR][1000 genomes]
rs61528738	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61610725	0.87[AMR][1000 genomes]
rs73592517	0.87[AMR][1000 genomes]
rs73592518	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592523	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592525	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592526	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530148	chr10:21065080-21724565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831807	chr10:21509185-21688043	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:21678000-21683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:21678200-21683000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:21678200-21692000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:21680200-21687200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:21680400-21683400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:21680400-21684200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:21681600-21687800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr10:21681800-21683000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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