Variant report

Variant	rs73594321
Chromosome Location	chr10:26501169-26501170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr10:26500570-26501222	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr10:26500551-26501186	H1-neurons	neurons:	n/a	n/a
3	MAX	chr10:26500704-26501177	H1-hESC	embryonic stem cell:	n/a	n/a
4	TBP	chr10:26500578-26501198	H1-hESC	embryonic stem cell:	n/a	n/a
5	SIN3A	chr10:26500566-26501178	H1-hESC	embryonic stem cell:	n/a	n/a
6	CTBP2	chr10:26500479-26501287	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr10:26500904-26501253	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26499153..26501750-chr10:26505199..26507063,2	K562	blood:

Variant related genes	Relation type
GAD2	TF binding region
ENSG00000136750	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56811945	1.00[AFR][1000 genomes]
rs73594303	1.00[AFR][1000 genomes]
rs73594308	1.00[AFR][1000 genomes]
rs73594317	1.00[AFR][1000 genomes]
rs73594332	1.00[AFR][1000 genomes]
rs8190772	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26500400-26501200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
2	chr10:26500600-26501200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
3	chr10:26500600-26501200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
4	chr10:26500600-26501200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr10:26500600-26501200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:26500600-26501200	Flanking Active TSS	Brain Germinal Matrix	brain
7	chr10:26500600-26501400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr10:26500600-26501600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr10:26500600-26501600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
10	chr10:26500600-26501600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr10:26500600-26501800	Bivalent Enhancer	Fetal Brain Male	brain
12	chr10:26500800-26501200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:26500800-26501200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr10:26500800-26501200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:26501000-26501200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:26501000-26501200	Bivalent Enhancer	Aorta	Aorta
17	chr10:26501000-26501200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr10:26501000-26501200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
19	chr10:26501000-26501400	Bivalent Enhancer	Fetal Brain Female	brain
20	chr10:26501000-26503000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:26501000-26503800	Weak transcription	Gastric	stomach

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