Variant report

Variant	rs8190772
Chromosome Location	chr10:26575864-26575865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11597572	1.00[JPT][hapmap]
rs56811945	1.00[AFR][1000 genomes]
rs73594303	1.00[AFR][1000 genomes]
rs73594308	1.00[AFR][1000 genomes]
rs73594317	1.00[AFR][1000 genomes]
rs73594321	1.00[AFR][1000 genomes]
rs73594332	1.00[AFR][1000 genomes]
rs8190672	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26559000-26576600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26564000-26581800	Weak transcription	Brain Anterior Caudate	brain
3	chr10:26566400-26579600	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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