Variant report

Variant	rs73594911
Chromosome Location	chr11:121839250-121839251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73594926	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594931	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594993	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73597003	1.00[AMR][1000 genomes]
rs73597004	1.00[AMR][1000 genomes]
rs73597016	1.00[AMR][1000 genomes]
rs7926418	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556478	chr11:121816920-121840829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv898429	chr11:121833245-121897762	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121833600-121840400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:121835200-121839600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:121836000-121840200	Weak transcription	HSMMtube	muscle
4	chr11:121837200-121839800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:121838600-121839400	Enhancers	Brain Substantia Nigra	brain
6	chr11:121838600-121839600	Enhancers	Brain Hippocampus Middle	brain
7	chr11:121839200-121839400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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