Variant report

Variant	rs73597622
Chromosome Location	chr10:20074354-20074355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:20074327-20074658	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr10:20074326-20074666	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr10:20074276-20074582	SK-N-MC	brain:	n/a	n/a
4	STAT3	chr10:20074334-20074620	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr10:20074335-20075126	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr10:20074310-20074739	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr10:20074345-20074602	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr10:20074325-20074647	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr10:20074316-20074739	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000212072	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56790888	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56996168	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57955952	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59143081	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61127305	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61191149	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61588436	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7084739	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73597614	0.83[AMR][1000 genomes]
rs73597616	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73597617	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73597618	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73597619	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73597621	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73597623	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73599696	0.88[AFR][1000 genomes]
rs73599697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73599702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601604	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601605	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601607	0.83[AMR][1000 genomes]
rs73601608	0.83[AMR][1000 genomes]
rs73601610	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601612	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73601614	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601616	1.00[AMR][1000 genomes]
rs73601618	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7903164	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7918855	1.00[AMR][1000 genomes]
rs7922604	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049295	chr10:19740296-20509036	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv34306	chr10:19777069-20117944	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1044794	chr10:20010269-20391329	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv540510	chr10:20010269-20391329	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1038966	chr10:20010469-20391190	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv540511	chr10:20010469-20391190	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1037055	chr10:20010469-20651965	Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv540512	chr10:20010469-20651965	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:20046200-20080800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:20070200-20077000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:20072000-20075800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:20072800-20075800	Weak transcription	Fetal Lung	lung
5	chr10:20073000-20074600	Weak transcription	HepG2	liver
6	chr10:20073000-20077000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:20073000-20077000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:20073400-20077000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:20073400-20077200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:20073400-20077600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:20073600-20074800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr10:20073800-20074600	Enhancers	Primary monocytes fromperipheralblood	blood

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