Variant report

Variant	rs7922604
Chromosome Location	chr10:20100738-20100739
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr10:20100491-20100853	MCF-7	breast:	n/a	n/a
2	RAD21	chr10:20100250-20101130	SK-N-SH	brain:	n/a	n/a
3	MYC	chr10:20100614-20100752	MCF10A-Er-Src	breast:	n/a	n/a
4	CTCF	chr10:20100312-20100916	SK-N-SH	brain:	n/a	chr10:20100647-20100656
5	RAD21	chr10:20100487-20100761	HepG2	liver:	n/a	n/a
6	RAD21	chr10:20100468-20100849	SK-N-SH_RA	brain:	n/a	n/a
7	CTCF	chr10:20100600-20100750	HCFaa	heart:	n/a	chr10:20100647-20100656
8	CTCF	chr10:20100522-20100825	H1-hESC	embryonic stem cell:	n/a	chr10:20100647-20100656
9	CTCF	chr10:20100600-20100750	GM12872	blood:	n/a	chr10:20100647-20100656
10	RAD21	chr10:20100487-20100810	SK-N-SH_RA	brain:	n/a	n/a
11	CTCF	chr10:20100600-20100750	HRE	kidney:	n/a	chr10:20100647-20100656
12	CTCF	chr10:20100620-20100770	HL-60	blood:	n/a	chr10:20100647-20100656
13	CTCF	chr10:20100466-20100836	IMR90	lung:	n/a	chr10:20100647-20100656
14	CTCF	chr10:20100505-20100781	MCF-7	breast:	n/a	chr10:20100647-20100656
15	RAD21	chr10:20100541-20100861	H1-hESC	embryonic stem cell:	n/a	n/a
16	RAD21	chr10:20100368-20100856	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr10:20100538-20100755	Kidney_OC	kidney:	n/a	chr10:20100647-20100656
18	ZNF143	chr10:20100494-20100778	H1-hESC	embryonic stem cell:	n/a	n/a
19	CTCF	chr10:20100470-20100839	GM12878	blood:	n/a	chr10:20100647-20100656
20	CTCF	chr10:20100563-20100743	HepG2	liver:	n/a	chr10:20100647-20100656
21	YY1	chr10:20100484-20100833	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr10:20100600-20100750	GM12875	blood:	n/a	chr10:20100647-20100656
23	CTCF	chr10:20100620-20100770	GM12868	blood:	n/a	chr10:20100647-20100656
24	CTCF	chr10:20100600-20100750	SAEC	small airway:	n/a	chr10:20100647-20100656
25	RAD21	chr10:20100463-20100859	IMR90	lung:	n/a	n/a
26	RAD21	chr10:20100466-20100844	H1-hESC	embryonic stem cell:	n/a	n/a
27	CTCF	chr10:20100620-20100770	GM12865	blood:	n/a	chr10:20100647-20100656
28	CTCF	chr10:20100394-20100748	MCF-7	breast:	n/a	chr10:20100647-20100656
29	STAT3	chr10:20100696-20100886	MCF10A-Er-Src	breast:	n/a	chr10:20100720-20100727
30	CTCF	chr10:20100600-20100750	GM12869	blood:	n/a	chr10:20100647-20100656
31	CTCF	chr10:20100620-20100770	GM12874	blood:	n/a	chr10:20100647-20100656
32	CTCF	chr10:20100620-20100770	HAc	cerebellar:	n/a	chr10:20100647-20100656
33	CTCF	chr10:20100600-20100750	HMEC	breast:	n/a	chr10:20100647-20100656
34	CTCF	chr10:20100600-20100750	SK-N-SH_RA	brain:	n/a	chr10:20100647-20100656
35	CTCF	chr10:20100515-20100761	MCF-7	breast:	n/a	chr10:20100647-20100656
36	CTCF	chr10:20100620-20100770	GM12873	blood:	n/a	chr10:20100647-20100656
37	RAD21	chr10:20100525-20100884	ECC-1	luminal epithelium:	n/a	n/a
38	CTCF	chr10:20100469-20100795	H1-hESC	embryonic stem cell:	n/a	chr10:20100647-20100656
39	CTCF	chr10:20100554-20100771	ProgFib	skin:	n/a	chr10:20100647-20100656
40	CTCF	chr10:20100640-20100790	NHEK	skin:	n/a	chr10:20100647-20100656
41	CTCF	chr10:20100556-20100770	Medullo	brain:	n/a	chr10:20100647-20100656
42	CTCF	chr10:20100388-20100881	MCF-7	breast:	n/a	chr10:20100647-20100656

Variant related genes	Relation type
PLXDC2	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11010796	0.85[CHB][hapmap]
rs56790888	0.85[AMR][1000 genomes]
rs56996168	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57955952	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59143081	0.81[AFR][1000 genomes]
rs61127305	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61191149	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61588436	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7084739	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73597618	0.85[AFR][1000 genomes]
rs73597619	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73597621	0.85[AMR][1000 genomes]
rs73597622	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73597623	0.85[AMR][1000 genomes]
rs73599696	0.82[AFR][1000 genomes]
rs73599697	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73599702	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73601604	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73601605	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73601610	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73601612	0.88[AFR][1000 genomes]
rs73601614	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73601616	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73601618	0.88[AFR][1000 genomes]
rs7903164	0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7918855	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049295	chr10:19740296-20509036	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv34306	chr10:19777069-20117944	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1044794	chr10:20010269-20391329	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv540510	chr10:20010269-20391329	Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1038966	chr10:20010469-20391190	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv540511	chr10:20010469-20391190	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1037055	chr10:20010469-20651965	Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv540512	chr10:20010469-20651965	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:20093800-20103600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:20094200-20103800	Weak transcription	Fetal Intestine Large	intestine
3	chr10:20096600-20100800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:20098800-20103400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:20100200-20101200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:20100200-20101600	Enhancers	Adipose Nuclei	Adipose
7	chr10:20100200-20102000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:20100400-20104000	Weak transcription	Aorta	Aorta
9	chr10:20100600-20101800	Enhancers	Brain Hippocampus Middle	brain
10	chr10:20100600-20103400	Enhancers	Fetal Lung	lung

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