Variant report

Variant	rs736005
Chromosome Location	chr5:75448046-75448047
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10066377	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10474464	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10514060	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10514061	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10805897	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10942752	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10942754	0.93[EUR][1000 genomes]
rs10942755	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10942756	0.95[EUR][1000 genomes]
rs10942757	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11742697	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11743217	0.95[EUR][1000 genomes]
rs12152728	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs12153073	0.87[ASN][1000 genomes]
rs12514991	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12522434	0.87[ASN][1000 genomes]
rs12522618	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs13153946	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13155330	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13158110	1.00[ASN][1000 genomes]
rs13159167	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13174339	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13178459	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1553324	0.87[ASN][1000 genomes]
rs1553325	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17565925	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17565946	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17565960	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17650942	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17651115	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1895390	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs1895391	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2336686	0.93[EUR][1000 genomes]
rs34064105	0.95[EUR][1000 genomes]
rs34476924	0.87[ASN][1000 genomes]
rs35357454	0.94[ASN][1000 genomes]
rs35683245	0.95[EUR][1000 genomes]
rs4277896	0.94[EUR][1000 genomes]
rs4296783	0.94[EUR][1000 genomes]
rs4532342	0.87[ASN][1000 genomes]
rs4566769	0.94[EUR][1000 genomes]
rs4582256	0.87[ASN][1000 genomes]
rs4610441	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs4703696	0.87[ASN][1000 genomes]
rs4703697	0.87[ASN][1000 genomes]
rs4704283	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs4704284	0.87[ASN][1000 genomes]
rs4704285	0.87[ASN][1000 genomes]
rs56279201	0.93[EUR][1000 genomes]
rs58628146	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62361382	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62363488	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62363490	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6414967	0.87[ASN][1000 genomes]
rs6414968	0.87[ASN][1000 genomes]
rs6453205	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6453206	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6859434	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6860159	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6866404	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6873987	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6881418	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6887382	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs72771998	0.94[ASN][1000 genomes]
rs7701465	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7709175	0.92[EUR][1000 genomes]
rs7710307	0.87[ASN][1000 genomes]
rs7716284	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7718358	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7719752	0.87[ASN][1000 genomes]
rs7723492	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7732173	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7732692	0.87[ASN][1000 genomes]
rs7732994	0.93[EUR][1000 genomes]
rs7734441	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9293675	1.00[CHB][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1033350	chr5:75367809-75538460	Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1034853	chr5:75382047-75534981	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv462212	chr5:75388834-75534570	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv598676	chr5:75388834-75534570	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv526084	chr5:75410511-75530494	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv2757119	chr5:75426863-75474780	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv2759351	chr5:75426863-75474780	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv34707	chr5:75429015-75450144	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1021722	chr5:75429015-75450547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv34958	chr5:75429015-75474921	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv818353	chr5:75431439-75450127	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1018966	chr5:75431439-75450547	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2763917	chr5:75431439-75450559	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv516875	chr5:75431439-75455251	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv598677	chr5:75431439-75455251	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1033837	chr5:75432737-75450547	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1021628	chr5:75435313-75450547	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv1015349	chr5:75439222-75450132	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75442200-75449800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:75447200-75448800	Enhancers	HUVEC	blood vessel
3	chr5:75447200-75449000	Enhancers	Gastric	stomach

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