Variant report

Variant	rs7732173
Chromosome Location	chr5:75477663-75477664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75469938..75472744-chr5:75476639..75478302,2	K562	blood:

Variant related genes	Relation type
ENSG00000254893	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10039662	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10040232	0.88[GIH][hapmap]
rs10064352	0.88[GIH][hapmap]
rs10066377	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10474464	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10514060	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10514061	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10514062	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11742697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12152728	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12153073	1.00[ASN][1000 genomes]
rs12522434	1.00[ASN][1000 genomes]
rs12522618	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13153946	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs13155330	1.00[CHB][hapmap]
rs13158110	0.87[ASN][1000 genomes]
rs13174339	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs13178459	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1553324	1.00[ASN][1000 genomes]
rs1553325	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17565925	1.00[CHB][hapmap]
rs17565946	1.00[CHB][hapmap]
rs17565960	1.00[CHB][hapmap]
rs17650942	1.00[CHB][hapmap]
rs17651115	1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs17651281	1.00[JPT][hapmap]
rs1895390	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2358531	0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs34476924	1.00[ASN][1000 genomes]
rs35357454	0.81[ASN][1000 genomes]
rs4532342	1.00[ASN][1000 genomes]
rs4582256	1.00[ASN][1000 genomes]
rs4610441	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs4703696	1.00[ASN][1000 genomes]
rs4703697	1.00[ASN][1000 genomes]
rs4704283	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4704284	1.00[ASN][1000 genomes]
rs4704285	1.00[ASN][1000 genomes]
rs58628146	0.81[ASN][1000 genomes]
rs62361382	0.87[ASN][1000 genomes]
rs62363488	0.87[ASN][1000 genomes]
rs62363490	0.87[ASN][1000 genomes]
rs6414967	1.00[ASN][1000 genomes]
rs6414968	1.00[ASN][1000 genomes]
rs6453205	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs6453206	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6453208	0.88[GIH][hapmap]
rs6859434	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6860159	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6866404	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs6881418	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs72771998	0.81[ASN][1000 genomes]
rs736005	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7445798	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7448148	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7448323	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7701465	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7710307	1.00[ASN][1000 genomes]
rs7718358	1.00[CHB][hapmap]
rs7719752	1.00[ASN][1000 genomes]
rs7732692	1.00[ASN][1000 genomes]
rs7734441	0.81[ASN][1000 genomes]
rs9293675	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1033350	chr5:75367809-75538460	Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1034853	chr5:75382047-75534981	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv462212	chr5:75388834-75534570	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv598676	chr5:75388834-75534570	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv526084	chr5:75410511-75530494	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7732173	CKLF	trans	lymphoblastoid	seeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75475400-75478600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:75475400-75479200	Enhancers	Placenta	Placenta
3	chr5:75476200-75477800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr5:75476200-75478000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr5:75476200-75478400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr5:75476400-75477800	Enhancers	Stomach Mucosa	stomach
7	chr5:75476400-75478000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr5:75476600-75478000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:75477000-75477800	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr5:75477200-75477800	Enhancers	K562	blood
11	chr5:75477400-75478000	ZNF genes & repeats	GM12878-XiMat	blood

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