Variant report

Variant	rs73600543
Chromosome Location	chr10:23138136-23138137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55840143	1.00[AMR][1000 genomes]
rs58334381	1.00[AMR][1000 genomes]
rs59577041	1.00[AMR][1000 genomes]
rs7904685	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23135600-23138200	Enhancers	Brain Hippocampus Middle	brain
2	chr10:23136200-23140400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:23137000-23140400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr10:23137000-23140600	Enhancers	Brain Cingulate Gyrus	brain
5	chr10:23137600-23138200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:23137600-23138200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:23137600-23138200	Enhancers	Gastric	stomach
8	chr10:23137600-23138200	Enhancers	Stomach Smooth Muscle	stomach
9	chr10:23137600-23138400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:23137600-23138400	Enhancers	Spleen	Spleen
11	chr10:23137600-23138600	Enhancers	Pancreas	Pancrea
12	chr10:23137600-23138600	Enhancers	Right Ventricle	heart
13	chr10:23137600-23139800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr10:23137600-23139800	Enhancers	Left Ventricle	heart
15	chr10:23137600-23139800	Enhancers	Right Atrium	heart
16	chr10:23137600-23140800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:23137800-23138200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:23137800-23138200	Enhancers	Adipose Nuclei	Adipose
19	chr10:23137800-23138200	Enhancers	HepG2	liver
20	chr10:23137800-23138400	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr10:23137800-23138400	Enhancers	Aorta	Aorta
22	chr10:23137800-23138400	Flanking Active TSS	Brain Substantia Nigra	brain
23	chr10:23137800-23138400	Enhancers	Colon Smooth Muscle	Colon
24	chr10:23137800-23138600	Enhancers	Psoas Muscle	Psoas
25	chr10:23137800-23139400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr10:23138000-23138200	Enhancers	Rectal Smooth Muscle	rectum
27	chr10:23138000-23138200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr10:23138000-23138200	Enhancers	HSMM	muscle
29	chr10:23138000-23138400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr10:23138000-23138400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:23138000-23138400	Flanking Active TSS	Brain Angular Gyrus	brain
32	chr10:23138000-23138400	Flanking Active TSS	Brain Anterior Caudate	brain
33	chr10:23138000-23138400	Enhancers	Esophagus	oesophagus
34	chr10:23138000-23138400	Enhancers	HSMMtube	muscle
35	chr10:23138000-23138600	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr10:23138000-23138600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
37	chr10:23138000-23138600	Enhancers	Ovary	ovary
38	chr10:23138000-23138600	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr10:23138000-23138800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr10:23138000-23138800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr10:23138000-23138800	Enhancers	HMEC	breast
42	chr10:23138000-23139000	Enhancers	Stomach Mucosa	stomach
43	chr10:23138000-23139000	Enhancers	HUVEC	blood vessel
44	chr10:23138000-23139200	Enhancers	Lung	lung

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