Variant report

Variant	rs7904685
Chromosome Location	chr10:23140441-23140442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55840143	1.00[AMR][1000 genomes]
rs58334381	1.00[AMR][1000 genomes]
rs59577041	1.00[AMR][1000 genomes]
rs73600543	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23137000-23140600	Enhancers	Brain Cingulate Gyrus	brain
2	chr10:23137600-23140800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:23138200-23142000	Weak transcription	Gastric	stomach
4	chr10:23138400-23140600	Enhancers	Brain Angular Gyrus	brain
5	chr10:23138400-23140600	Enhancers	Brain Substantia Nigra	brain
6	chr10:23138400-23141800	Weak transcription	Spleen	Spleen
7	chr10:23138600-23141000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:23138600-23141800	Weak transcription	Ovary	ovary
9	chr10:23138600-23144200	Weak transcription	Right Ventricle	heart
10	chr10:23138800-23140800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:23138800-23142400	Weak transcription	HSMMtube	muscle
12	chr10:23138800-23143000	Weak transcription	Osteobl	bone
13	chr10:23139000-23141200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:23139000-23142000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:23139000-23142200	Enhancers	Brain Hippocampus Middle	brain
16	chr10:23139000-23142600	Enhancers	Brain Anterior Caudate	brain
17	chr10:23139000-23143600	Weak transcription	Fetal Heart	heart
18	chr10:23139000-23144200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr10:23139200-23141800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:23139800-23142000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:23139800-23142000	Weak transcription	Right Atrium	heart
22	chr10:23139800-23143000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:23139800-23144200	Weak transcription	Left Ventricle	heart
24	chr10:23140000-23143800	Weak transcription	Aorta	Aorta
25	chr10:23140200-23142000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:23140400-23140600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr10:23140400-23141000	Enhancers	Placenta Amnion	Placenta Amnion
28	chr10:23140400-23142400	Enhancers	HepG2	liver
29	chr10:23140400-23144400	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links