Variant report

Variant	rs73603066
Chromosome Location	chr16:82091824-82091825
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82087347..82089906-chr16:82091633..82093166,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16956360	0.86[AFR][1000 genomes]
rs73603061	0.86[AFR][1000 genomes]
rs73603089	1.00[AMR][1000 genomes]
rs8057705	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191101	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191105	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191181	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8191187	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
2	chr16:82084000-82092400	Weak transcription	Colonic Mucosa	Colon
3	chr16:82085200-82093000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr16:82086200-82103800	Weak transcription	Gastric	stomach
5	chr16:82089400-82093800	Weak transcription	Lung	lung
6	chr16:82089400-82105800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr16:82089600-82092800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr16:82089600-82103800	Weak transcription	Pancreas	Pancrea
9	chr16:82089800-82092000	Weak transcription	Small Intestine	intestine
10	chr16:82089800-82092800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr16:82090000-82093400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr16:82090200-82092000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr16:82090200-82093400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr16:82090400-82092200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr16:82090600-82092200	Weak transcription	Stomach Mucosa	stomach
16	chr16:82090600-82095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr16:82090600-82095800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr16:82090600-82095800	Weak transcription	NHEK	skin
19	chr16:82090800-82092000	Genic enhancers	Fetal Intestine Small	intestine
20	chr16:82090800-82101000	Enhancers	HepG2	liver
21	chr16:82091400-82092400	Enhancers	Liver	Liver
22	chr16:82091400-82093200	Weak transcription	HMEC	breast
23	chr16:82091400-82095000	Enhancers	Placenta	Placenta
24	chr16:82091600-82094000	Enhancers	Duodenum Mucosa	Duodenum
25	chr16:82091800-82093000	Enhancers	Sigmoid Colon	Sigmoid Colon

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