Variant report

Variant	rs73603061
Chromosome Location	chr16:82090187-82090188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16956351	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16956356	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16956360	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16956363	1.00[AMR][1000 genomes]
rs57981289	1.00[AMR][1000 genomes]
rs58349358	1.00[AMR][1000 genomes]
rs58442388	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59037033	1.00[AMR][1000 genomes]
rs59166161	1.00[AMR][1000 genomes]
rs60135185	1.00[AMR][1000 genomes]
rs61121331	1.00[AMR][1000 genomes]
rs7184886	1.00[AMR][1000 genomes]
rs7196477	1.00[AMR][1000 genomes]
rs73598786	1.00[AMR][1000 genomes]
rs73598792	1.00[AMR][1000 genomes]
rs73600703	1.00[AMR][1000 genomes]
rs73600704	1.00[AMR][1000 genomes]
rs73600707	1.00[AMR][1000 genomes]
rs73600711	1.00[AMR][1000 genomes]
rs73600737	1.00[AMR][1000 genomes]
rs73600744	1.00[AMR][1000 genomes]
rs73600745	1.00[AMR][1000 genomes]
rs73600748	1.00[AMR][1000 genomes]
rs73600749	1.00[AMR][1000 genomes]
rs73600765	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600770	1.00[AMR][1000 genomes]
rs73603043	1.00[AMR][1000 genomes]
rs73603046	1.00[AMR][1000 genomes]
rs73603049	1.00[AMR][1000 genomes]
rs73603066	0.86[AFR][1000 genomes]
rs8191094	0.86[AFR][1000 genomes]
rs8191101	0.80[AFR][1000 genomes]
rs8191105	0.84[AFR][1000 genomes]
rs8191127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
2	chr16:82084000-82092400	Weak transcription	Colonic Mucosa	Colon
3	chr16:82085200-82093000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr16:82086200-82103800	Weak transcription	Gastric	stomach
5	chr16:82088800-82090400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr16:82088800-82090600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:82088800-82090800	Enhancers	HMEC	breast
8	chr16:82089000-82090200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr16:82089000-82090600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr16:82089000-82090600	Enhancers	NHEK	skin
11	chr16:82089000-82090800	Enhancers	Fetal Intestine Small	intestine
12	chr16:82089000-82091400	Weak transcription	Placenta	Placenta
13	chr16:82089200-82090400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr16:82089400-82090200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr16:82089400-82090400	Enhancers	Fetal Lung	lung
16	chr16:82089400-82091000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr16:82089400-82093800	Weak transcription	Lung	lung
18	chr16:82089400-82105800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr16:82089600-82090600	Enhancers	Stomach Mucosa	stomach
20	chr16:82089600-82091800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr16:82089600-82092800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr16:82089600-82103800	Weak transcription	Pancreas	Pancrea
23	chr16:82089800-82090200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr16:82089800-82092000	Weak transcription	Small Intestine	intestine
25	chr16:82089800-82092800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr16:82090000-82090600	Flanking Active TSS	Liver	Liver
27	chr16:82090000-82090800	Flanking Active TSS	HepG2	liver
28	chr16:82090000-82093400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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