Variant report
| Variant | rs60135185 |
|---|---|
| Chromosome Location | chr16:82052283-82052284 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:82051682..82053515-chr16:82055462..82057301,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs16956351 | 1.00[AMR][1000 genomes] |
| rs16956356 | 1.00[AMR][1000 genomes] |
| rs16956360 | 1.00[AMR][1000 genomes] |
| rs16956363 | 1.00[AMR][1000 genomes] |
| rs56242390 | 1.00[AMR][1000 genomes] |
| rs57981289 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58349358 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58442388 | 1.00[AMR][1000 genomes] |
| rs59037033 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59166161 | 1.00[AMR][1000 genomes] |
| rs61121331 | 1.00[AMR][1000 genomes] |
| rs7184886 | 1.00[AMR][1000 genomes] |
| rs7196477 | 1.00[AMR][1000 genomes] |
| rs73598786 | 1.00[AMR][1000 genomes] |
| rs73598792 | 1.00[AMR][1000 genomes] |
| rs73600703 | 1.00[AMR][1000 genomes] |
| rs73600704 | 1.00[AMR][1000 genomes] |
| rs73600707 | 1.00[AMR][1000 genomes] |
| rs73600711 | 1.00[AMR][1000 genomes] |
| rs73600737 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73600744 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73600745 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73600748 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73600749 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73600765 | 1.00[AMR][1000 genomes] |
| rs73600770 | 1.00[AMR][1000 genomes] |
| rs73603043 | 1.00[AMR][1000 genomes] |
| rs73603046 | 1.00[AMR][1000 genomes] |
| rs73603049 | 1.00[AMR][1000 genomes] |
| rs73603061 | 1.00[AMR][1000 genomes] |
| rs8191127 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv907012 | chr16:81986896-82115148 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv1058368 | chr16:82029516-82152788 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv532598 | chr16:82034475-82738733 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 28 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:82050600-82053000 | Weak transcription | Duodenum Mucosa | Duodenum |
