Variant report

Variant	rs73600737
Chromosome Location	chr16:82050192-82050193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82049516..82052085-chr16:82055995..82058256,2	K562	blood:
2	chr16:82049544..82050394-chr16:82263299..82263885,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16956351	1.00[AMR][1000 genomes]
rs16956356	1.00[AMR][1000 genomes]
rs16956360	1.00[AMR][1000 genomes]
rs16956363	1.00[AMR][1000 genomes]
rs56242390	1.00[AMR][1000 genomes]
rs57981289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58349358	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58442388	1.00[AMR][1000 genomes]
rs59037033	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59166161	1.00[AMR][1000 genomes]
rs60135185	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61121331	1.00[AMR][1000 genomes]
rs7184886	1.00[AMR][1000 genomes]
rs7196477	1.00[AMR][1000 genomes]
rs73598786	1.00[AMR][1000 genomes]
rs73598792	1.00[AMR][1000 genomes]
rs73600703	1.00[AMR][1000 genomes]
rs73600704	1.00[AMR][1000 genomes]
rs73600707	1.00[AMR][1000 genomes]
rs73600711	1.00[AMR][1000 genomes]
rs73600744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600748	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600749	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600765	1.00[AMR][1000 genomes]
rs73600770	1.00[AMR][1000 genomes]
rs73603043	1.00[AMR][1000 genomes]
rs73603046	1.00[AMR][1000 genomes]
rs73603049	1.00[AMR][1000 genomes]
rs73603061	1.00[AMR][1000 genomes]
rs8191127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82049600-82050200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:82049600-82050200	Enhancers	Liver	Liver
3	chr16:82049600-82050200	Bivalent/Poised TSS	A549	lung
4	chr16:82049600-82050400	Flanking Active TSS	Stomach Mucosa	stomach
5	chr16:82049600-82050600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr16:82049600-82051800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr16:82049600-82051800	Enhancers	NHDF-Ad	bronchial
8	chr16:82049800-82050200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr16:82049800-82050200	Enhancers	Aorta	Aorta
10	chr16:82049800-82050200	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr16:82049800-82050400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr16:82049800-82050400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr16:82049800-82050400	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr16:82049800-82050400	Flanking Active TSS	HUVEC	blood vessel
15	chr16:82049800-82050600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr16:82049800-82050600	Flanking Active TSS	NHEK	skin
17	chr16:82050000-82050200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr16:82050000-82050200	Active TSS	Rectal Mucosa Donor 29	rectum
19	chr16:82050000-82050200	Flanking Active TSS	HMEC	breast
20	chr16:82050000-82050400	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr16:82050000-82050400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
22	chr16:82050000-82050400	Enhancers	NH-A	brain
23	chr16:82050000-82050400	Flanking Active TSS	Osteobl	bone

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