Variant report

Variant	rs59166161
Chromosome Location	chr16:82026692-82026693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82020062..82021954-chr16:82025787..82028162,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16956351	1.00[AMR][1000 genomes]
rs16956356	1.00[AMR][1000 genomes]
rs16956360	1.00[AMR][1000 genomes]
rs16956363	1.00[AMR][1000 genomes]
rs56242390	1.00[AMR][1000 genomes]
rs57981289	1.00[AMR][1000 genomes]
rs58349358	1.00[AMR][1000 genomes]
rs58442388	1.00[AMR][1000 genomes]
rs59037033	1.00[AMR][1000 genomes]
rs60135185	1.00[AMR][1000 genomes]
rs61121331	1.00[AMR][1000 genomes]
rs7184886	1.00[AMR][1000 genomes]
rs7196477	1.00[AMR][1000 genomes]
rs73598786	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73598792	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73600703	1.00[AMR][1000 genomes]
rs73600704	1.00[AMR][1000 genomes]
rs73600707	1.00[AMR][1000 genomes]
rs73600711	1.00[AMR][1000 genomes]
rs73600737	1.00[AMR][1000 genomes]
rs73600744	1.00[AMR][1000 genomes]
rs73600745	1.00[AMR][1000 genomes]
rs73600748	1.00[AMR][1000 genomes]
rs73600749	1.00[AMR][1000 genomes]
rs73600765	1.00[AMR][1000 genomes]
rs73600770	1.00[AMR][1000 genomes]
rs73603043	1.00[AMR][1000 genomes]
rs73603046	1.00[AMR][1000 genomes]
rs73603049	1.00[AMR][1000 genomes]
rs73603061	1.00[AMR][1000 genomes]
rs8191127	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82021600-82029600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr16:82021800-82030000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:82022000-82030000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr16:82023000-82027800	Weak transcription	Primary T cells from cord blood	blood
5	chr16:82023000-82031800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr16:82023600-82036600	Weak transcription	Fetal Kidney	kidney
7	chr16:82023800-82027800	Weak transcription	Pancreas	Pancrea
8	chr16:82024000-82029400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:82024400-82030400	Weak transcription	Small Intestine	intestine
10	chr16:82024600-82030000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr16:82024800-82032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:82025200-82030000	Weak transcription	Fetal Intestine Large	intestine
13	chr16:82026200-82028200	Weak transcription	Fetal Intestine Small	intestine
14	chr16:82026400-82027000	Enhancers	Brain Anterior Caudate	brain
15	chr16:82026400-82027000	Enhancers	Fetal Lung	lung
16	chr16:82026400-82027200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr16:82026400-82030000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr16:82026600-82026800	Enhancers	Fetal Stomach	stomach
19	chr16:82026600-82028200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr16:82026600-82030200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr16:82026600-82031000	Weak transcription	Primary hematopoietic stem cells	blood

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